X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalview.java;fp=src%2Fjalview%2Fbin%2FJalview.java;h=b8f49a2bbcba421a57f83c5f60a7c18218752613;hb=521951df7d677995b8e142fd0a3c3061df5d2781;hp=b6fc7e89557ac23daf8ffa55da324765d34ae68b;hpb=d18e36d8f4a511e82af3564647b3154267b177c6;p=jalview.git

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index b6fc7e8..b8f49a2 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -807,8 +807,7 @@ public class Jalview implements ApplicationSingletonI, JalviewJSApi
          * 
          */
         {
-          if (aparser.contains(ArgsParser.NOANNOTATION)
-                  || aparser.contains(ArgsParser.NOANNOTATION2))
+          if (noAnnotation)
           {
             af.getViewport().setShowAnnotation(false);
             if (!af.getViewport().isShowAnnotation())