X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalview.java;h=1116fe404ec5733ba508dbdae70a5513b3b29d4f;hb=c766c1829042b039ea2ff56fc05f4a0100c2a73d;hp=5bc98b16775c51218b059f1024a0280ce2d19a7a;hpb=9693242bcb97efe77f9bad5be68c4984358a0de5;p=jalview.git

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 5bc98b1..1116fe4 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -280,13 +280,15 @@ public class Jalview
 
             if (file.endsWith(".jar"))
             {
-              new Jalview2XML().LoadJalviewAlign(file);
+              format = "Jalview";
             }
             else
             {
               format = new jalview.io.IdentifyFile().Identify(file, protocol);
-              new jalview.io.FileLoader().LoadFile(file, protocol, format);
             }
+
+            fileLoader.LoadFile(file, protocol, format);
+
           }
     }
 }