X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalview.java;h=857bd84de1ae6738de99bf5f4b98fd8c2513adbf;hb=b419d3b17606d478c234678487ff34d97bfa83cc;hp=694fe00d15de7c5cd0faf2ded40e23c5dcfc714a;hpb=27a73b75c2195a7406f55bb81c57a4e3b8cc0962;p=jalview.git

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 694fe00..857bd84 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -67,6 +67,8 @@ import java.util.logging.Logger;
 import javax.swing.LookAndFeel;
 import javax.swing.UIManager;
 
+import com.threerings.getdown.util.LaunchUtil;
+
 import groovy.lang.Binding;
 import groovy.util.GroovyScriptEngine;
 
@@ -265,6 +267,23 @@ public class Jalview
             + System.getProperty("os.name") + " "
             + System.getProperty("os.version"));
 
+    String appdirString = System.getProperty("getdownappdir");
+    if (appdirString != null && appdirString.length() > 0)
+    {
+      final File appdir = new File(appdirString);
+      new Thread()
+      {
+        @Override
+        public void run()
+        {
+          LaunchUtil.upgradeGetdown(
+                  new File(appdir, "getdown-launcher-old.jar"),
+                  new File(appdir, "getdown-launcher.jar"),
+                  new File(appdir, "getdown-launcher-new.jar"));
+        }
+      }.start();
+
+    }
     ArgsParser aparser = new ArgsParser(args);
     boolean headless = false;
 
@@ -417,6 +436,20 @@ public class Jalview
 //       }
       ;
       desktop.setInBatchMode(true); // indicate we are starting up
+
+      try
+      {
+        JalviewTaskbar.setTaskbar(this);
+      } catch (Exception e)
+      {
+        System.out.println("Cannot set Taskbar");
+        // e.printStackTrace();
+      } catch (Throwable t)
+      {
+        System.out.println("Cannot set Taskbar");
+        // t.printStackTrace();
+      }
+
       desktop.setVisible(true);
 
       if (!Platform.isJS())
@@ -1071,7 +1104,7 @@ public class Jalview
     }
     try
     {
-      Map<String, Object> vbinding = new HashMap<>();
+      Map<String, java.lang.Object> vbinding = new HashMap<>();
       vbinding.put("Jalview", this);
       if (af != null)
       {