X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalview.java;h=a73405424d5743516bd7ae0325cadfdb209a439e;hb=4944c2f33bb34b4f262fd2f3ae40dcdc2a825557;hp=1a67c05f9e52e917ad2541025b06286d0fbf8f7d;hpb=55e2e9b22b133db8b9ff0979b0338a33081fc8fd;p=jalview.git

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 1a67c05..a734054 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -79,6 +79,7 @@ public class Jalview
         System.exit(0);
           }
 
+          Cache.loadProperties(aparser.getValue("props")); // must do this before anything else!
 
           if (aparser.contains("nodisplay"))
           {
@@ -103,8 +104,6 @@ public class Jalview
             System.exit(0);
           }
 
-        Cache.loadProperties(aparser.getValue("props"));
-
         Desktop desktop = null;
         if( !headless )
         {
@@ -164,7 +163,7 @@ public class Jalview
             if (file.endsWith(".jar"))
               format = "Jalview";
             else
-              format = jalview.io.IdentifyFile.Identify(file, protocol);
+              format = new jalview.io.IdentifyFile().Identify(file, protocol);
 
             System.out.println("Opening: " + format + " file " + file);
 
@@ -239,7 +238,7 @@ public class Jalview
             }
             else
             {
-              format = jalview.io.IdentifyFile.Identify(file, protocol);
+              format = new jalview.io.IdentifyFile().Identify(file, protocol);
               desktop.LoadFile(file, protocol, format);
             }
           }