X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalview.java;h=fae2b7597ec10ca45093e7a9347c8cfe726dd022;hb=5014beeca83ef54a5740388c443d85f532a34db6;hp=28d029c1ac68d23c33fc0d31bd7d62f279c7e2a5;hpb=7d52ef194d39e75fed7730041da25c48e456cf8c;p=jalview.git

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 28d029c..fae2b75 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -20,6 +20,7 @@
  */
 package jalview.bin;
 
+import jalview.api.AlignCalcWorkerI;
 import jalview.api.AlignFrameI;
 import jalview.api.AlignViewportI;
 import jalview.api.JalviewApp;
@@ -640,14 +641,6 @@ public class Jalview implements ApplicationSingletonI, JalviewJSApi
         // TODO ?
       }
 
-      if (aparser.contains(ArgsParser.SHOWOVERVIEW))
-      {
-        jalview.bin.Cache.setPropertyNoSave(Preferences.SHOW_OVERVIEW,
-                "true");
-
-        System.out.println("CMD [showoverview] executed successfully!");
-      }
-
       if (aparser.contains(ArgsParser.NOMENUBAR))
       {
         noMenuBar = true;
@@ -757,6 +750,13 @@ public class Jalview implements ApplicationSingletonI, JalviewJSApi
           System.out.println(
                   "CMD [-annotations " + data + "] executed successfully!");
         }
+
+        if (aparser.contains(ArgsParser.SHOWOVERVIEW))
+        {
+          af.overviewMenuItem_actionPerformed(null);
+          System.out.println("CMD [showoverview] executed successfully!");
+        }
+
         // set or clear the sortbytree flag.
         if (aparser.contains(ArgsParser.SORTBYTREE))
         {
@@ -2050,5 +2050,11 @@ public class Jalview implements ApplicationSingletonI, JalviewJSApi
     currentAlignFrame.overviewMenuItem_actionPerformed(null);
   }
 
+  public void notifyWorker(AlignCalcWorkerI worker, String status)
+  {
+    // System.out.println("Jalview worker " + worker.getClass().getSimpleName()
+    // + " " + status);
+  }
+
 }