X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalview.java;h=fc6d23e52363bb33943c4bd4b73b000b4e14585d;hb=ee684c859bd7cddaa517a81cf11e168d4596ddbe;hp=64ffd38c696f16185115b68f89c5d98b9eda5b08;hpb=75963e12376e3dbfc94e6324461024baea68178f;p=jalview.git

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 64ffd38..fc6d23e 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -94,6 +94,7 @@ public class Jalview
               .println("Usage: jalview -open [FILE] [OUTPUT_FORMAT] [OUTPUT_FILE]\n\n"
                       + "-nodisplay\tRun Jalview without User Interface.\n"
                       + "-props FILE\tUse the given Jalview properties file instead of users default.\n"
+                      + "-colour COLOURSCHEME\tThe colourscheme to be applied to the alignment\n"
                       + "-annotations FILE\tAdd precalculated annotations to the alignment.\n"
                       + "-tree FILE\tLoad the given newick format tree file onto the alignment\n"
                       + "-features FILE\tUse the given file to mark features on the alignment.\n"