X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewAppLoader.java;h=2b6503ac88846ba86ff2199fb9823d2d3fe4c577;hb=81ca65d00bdb8a49fa063272ce53fdc8758c2264;hp=dbb3611b432fbd995d54fd61a202a0de87b1b63a;hpb=cb597de858c70703321daa67adef5089957e9f55;p=jalview.git

diff --git a/src/jalview/bin/JalviewAppLoader.java b/src/jalview/bin/JalviewAppLoader.java
index dbb3611..2b6503a 100644
--- a/src/jalview/bin/JalviewAppLoader.java
+++ b/src/jalview/bin/JalviewAppLoader.java
@@ -665,4 +665,25 @@ public class JalviewAppLoader
     }
   }
 
+  /**
+   * read sequence1...sequenceN as a raw alignment
+   * 
+   * @param jalviewApp
+   * @return
+   */
+  public String getPastedSequence(JalviewApp jalviewApp) {
+    StringBuffer data = new StringBuffer("PASTE");
+    int i = 1;
+    String file = null;
+    while ((file = app.getParameter("sequence" + i)) != null)
+    {
+      data.append(file.toString() + "\n");
+      i++;
+    }
+    if (data.length() > 5)
+    {
+      file = data.toString();
+    }
+    return file;
+  }
 }