X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewJS2.java;h=61b3487ba22b4cac58b8657099d7315182686a0b;hb=7d602d0e4b439e56af3e4551ed71f181a8025534;hp=70e8946f49f3a84e016e4569e092d99dad29ab3d;hpb=8fa69554edf6aeb278b4a4afd8e2b60264fdccd8;p=jalview.git

diff --git a/src/jalview/bin/JalviewJS2.java b/src/jalview/bin/JalviewJS2.java
index 70e8946..61b3487 100644
--- a/src/jalview/bin/JalviewJS2.java
+++ b/src/jalview/bin/JalviewJS2.java
@@ -20,26 +20,37 @@ public class JalviewJS2
 
   static {
     /**
-     * @j2sNative
+     * @ could do it this way:
      * 
-     *            thisApplet.__Info.args =
-     *            ["open","examples/uniref50.fa","features",
-     *            "examples/exampleFeatures.txt"];
-     */
-
-    /**
-     * set space-delimited query parameters as arguments to Jalview main
-     * 
-     * @j2sNative
+     * j2sNative
      * 
-     *            var hr = decodeURI(document.location.href); var pos =
-     *            hr.indexOf("?"); if (pos > 0) { thisApplet.__Info.args =
-     *            hr.substring(pos+1).split(" "); }
+     * J2S.thisApplet.__Info.args = [ "open","examples/uniref50.fa",
+     * "features","examples/exampleFeatures.txt", "noannotation" ];
      */
   }
 
   public static void main(String[] args) throws Exception
   {
+    if (args.length == 0)
+    {
+      args = new String[] {
+        //  "headless",
+          "open", "examples/uniref50.fa",
+//          "features",
+//          "examples/exampleFeatures.txt"
+//          , "noannotation"
+          //, "showoverview"
+          //, "png", "test-bh.png"
+      };
+    }
+
+    // String cmds = "nodisplay -open examples/uniref50.fa -sortbytree -props
+    // test/jalview/io/testProps.jvprops -colour zappo "
+    // + "-jabaws http://www.compbio.dundee.ac.uk/jabaws -nosortbytree "
+    // + "-features examples/testdata/plantfdx.features -annotations
+    // examples/testdata/plantfdx.annotations -tree
+    // examples/testdata/uniref50_test_tree";
+    // args = cmds.split(" ");
     Jalview.main(args);
 	//showFocusTimer();
 }