X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewJS2.java;h=7ce59b7b346e54c491958f46f456234ed84b3fd6;hb=cc248239489d51080e79783f196e752acf4ee64e;hp=037f41eb125d49c104f52337af28929b1f853660;hpb=7977bb38c5ea8f5cbf6c3428e6fdfbd5aba764cd;p=jalview.git

diff --git a/src/jalview/bin/JalviewJS2.java b/src/jalview/bin/JalviewJS2.java
index 037f41e..7ce59b7 100644
--- a/src/jalview/bin/JalviewJS2.java
+++ b/src/jalview/bin/JalviewJS2.java
@@ -1,7 +1,34 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.bin;
 
+import jalview.util.Platform;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import javax.swing.Timer;
+
 /**
- * Entry point for JalviewJS development. 
+ * Entry point for JalviewJS development.
  * 
  * 
  * 
@@ -11,21 +38,70 @@ package jalview.bin;
 public class JalviewJS2
 {
 
-  static {
+  static
+  {
     /**
-     * @j2sNative
+     * @ could do it this way:
      * 
-     *            thisApplet.__Info.args =
-     *            ["open","http://www.jalview.org/builds/release/examples/uniref50.fa","features",
-     *            "http://www.jalview.org/builds/release/examples/exampleFeatures.txt"];
+     * j2sNative
+     * 
+     * J2S.thisApplet.__Info.args = [ "open","examples/uniref50.fa",
+     * "features","examples/exampleFeatures.txt", "noannotation" ];
      */
-    
   }
 
   public static void main(String[] args) throws Exception
   {
+    if (args.length == 0)
+    {
+      args = new String[] {
+        //  "headless",
+          "open", "examples/uniref50.fa",
+//          "features",
+//          "examples/exampleFeatures.txt"
+//          , "noannotation"
+          //, "showoverview"
+          //, "png", "test-bh.png"
+      };
+    }
+
+    // String cmds = "nodisplay -open examples/uniref50.fa -sortbytree -props
+    // test/jalview/io/testProps.jvprops -colour zappo "
+    // + "-jabaws http://www.compbio.dundee.ac.uk/jabaws -nosortbytree "
+    // + "-features examples/testdata/plantfdx.features -annotations
+    // examples/testdata/plantfdx.annotations -tree
+    // examples/testdata/uniref50_test_tree";
+    // args = cmds.split(" ");
     Jalview.main(args);
+    // showFocusTimer();
   }
 
+  protected static int focusTime = 0;
+
+  private static void showFocusTimer()
+  {
+
+    if (Platform.isJS())
+    {
+      Timer t = new Timer(100, new ActionListener()
+      {
+
+        @Override
+        public void actionPerformed(ActionEvent e)
+        {
+          String s = /** @j2sNative document.activeElement.id || */
+                  null;
+
+          s += " " + (++focusTime);
+
+          /** @j2sNative document.title = s; */
+        }
+
+      });
+
+      t.setRepeats(true);
+      t.start();
+    }
+  }
 
 }