X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLite.java;h=9a09df4202c457fc826c7bfc6a52cb6c14263165;hb=eb5197242ba17fcff4ce0e18419ca81a63418f7a;hp=9226dc451ad03fe4c68c34a35b127e683d4aec52;hpb=221f8d1d2054a4582dd3a4ca52f7708fccdf053c;p=jalview.git

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index 9226dc4..9a09df4 100755
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -599,7 +599,7 @@ public class JalviewLite extends Applet
      * State variable: format of file source
      */
     String format;
-
+    String _file;
     JalviewLite applet;
     private void dbgMsg(String msg)
     {
@@ -635,14 +635,10 @@ public class JalviewLite extends Applet
       dbgMsg("Protocol identified as '" + protocol + "'");
       return file;
     }
-
+    
     public LoadingThread(String _file, JalviewLite _applet)
     {
-      dbgMsg("Loading thread started with:\n>>file\n" + _file + ">>endfile");
-      file = setProtocolState(_file);
-
-      format = new jalview.io.IdentifyFile().Identify(file, protocol);
-      dbgMsg("File identified as '" + format + "'");
+      this._file=_file;
       applet = _applet;
     }
 
@@ -660,6 +656,11 @@ public class JalviewLite extends Applet
 
     private void startLoading()
     {
+      dbgMsg("Loading thread started with:\n>>file\n" + _file + ">>endfile");
+      file = setProtocolState(_file);
+
+      format = new jalview.io.IdentifyFile().Identify(file, protocol);
+      dbgMsg("File identified as '" + format + "'");
       dbgMsg("Loading started.");
       Alignment al = null;
       try