X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLite.java;h=9c23a0af68dd02273967ac7632163da45ae57925;hb=aa213924876640ba82e866da5a750d9cdaa816d2;hp=342ff4c255ffd4347f73957e610a612f8dff53f6;hpb=a79f9e113c51c032070c670e45ce3eb464691166;p=jalview.git

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index 342ff4c..9c23a0a 100644
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -732,9 +732,9 @@ public class JalviewLite extends Applet implements
    * jalview.bin.JalviewLiteJsApi#loadAnnotationFrom(jalview.appletgui.AlignFrame
    * , java.lang.String)
    */
-  public void loadFeaturesFrom(AlignFrame alf, String features, boolean autoenabledisplay)
+  public boolean loadFeaturesFrom(AlignFrame alf, String features, boolean autoenabledisplay)
   {
-    alf.parseFeaturesFile(features, AppletFormatAdapter.PASTE, autoenabledisplay);
+    return alf.parseFeaturesFile(features, AppletFormatAdapter.PASTE, autoenabledisplay);
   }
 
 
@@ -1871,12 +1871,13 @@ public class JalviewLite extends Applet implements
         String sScoreFile = applet.getParameter("scoreFile");
         if( sScoreFile != null && !"".equals(sScoreFile) ) {
             try {
-            	URL urlScore = new URL(sScoreFile);
-            	newAlignFrame.loadScoreFile(urlScore);
-            	
-            }
-            catch( Exception e ) {
-            	// TODO error message log (shows a warning dialogbox?)
+              if (debug) {
+                System.err.println("Attempting to load T-COFFEE score file from the scoreFile parameter");
+              }
+              if (!newAlignFrame.loadScoreFile(sScoreFile)) {
+                System.err.println("Failed to parse T-COFFEE parameter as a valid score file ('"+sScoreFile+"')");
+              }
+            }catch( Exception e ) {
             	System.err.printf("Cannot read score file: '%s'. Cause: %s \n", sScoreFile, e.getMessage());
             }
         }