X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLite.java;h=ac1f9ac1de06bb020e939f383e98b7ece42c5256;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=dab649e79ee0e16e6d5ca5c3b2b0eaca7a7e1955;hpb=770bcd6eedfcb6329d0e1310502a0a03c7279b18;p=jalview.git

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index dab649e..ac1f9ac 100644
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -2024,6 +2024,12 @@ public class JalviewLite extends Applet implements
                     param, protocol);
             JnetAnnotationMaker.add_annotation(predictions,
                     newAlignFrame.viewport.getAlignment(), 0, false); // false==do
+            SequenceI repseq = newAlignFrame.viewport.getAlignment()
+                    .getSequenceAt(0);
+            newAlignFrame.viewport.getAlignment().setSeqrep(repseq);
+            ColumnSelection cs = new ColumnSelection();
+            cs.hideInsertionsFor(repseq);
+            newAlignFrame.viewport.setColumnSelection(cs);
             // not
             // add
             // sequence