X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLite.java;h=ae8bc98d92a970750eb4cfe70c4a4dc7184f1513;hb=ead72caff9aef9b7103dbb15907aeae777200832;hp=4e029846a6aa9394ab774641b5b4a08fac7feebc;hpb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;p=jalview.git

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index 4e02984..ae8bc98 100644
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -1269,7 +1269,7 @@ public class JalviewLite extends Applet implements
 
   public static boolean debug = false;
 
-  static String builddate = null, version = null;
+  static String builddate = null, version = null, installation = null;
 
   private static void initBuildDetails()
   {
@@ -1277,6 +1277,7 @@ public class JalviewLite extends Applet implements
     {
       builddate = "unknown";
       version = "test";
+      installation = "Webstart";
       java.net.URL url = JalviewLite.class
               .getResource("/.build_properties");
       if (url != null)
@@ -1296,6 +1297,10 @@ public class JalviewLite extends Applet implements
             {
               builddate = line.substring(line.indexOf("=") + 1);
             }
+            if (line.indexOf("INSTALLATION") > -1)
+            {
+              installation = line.substring(line.indexOf("=") + 1);
+            }
           }
         } catch (Exception ex)
         {
@@ -1311,6 +1316,12 @@ public class JalviewLite extends Applet implements
     return builddate;
   }
 
+  public static String getInstallation()
+  {
+    initBuildDetails();
+    return installation;
+  }
+
   public static String getVersion()
   {
     initBuildDetails();
@@ -1360,6 +1371,7 @@ public class JalviewLite extends Applet implements
 
       System.err.println("JalviewLite Version " + getVersion());
       System.err.println("Build Date : " + getBuildDate());
+      System.err.println("Installation : " + getInstallation());
 
     }
     String externalsviewer = getParameter("externalstructureviewer");
@@ -1392,8 +1404,7 @@ public class JalviewLite extends Applet implements
       }
       else
       {
-        throw new Error(
-                "Invalid separator parameter - must be non-zero length");
+        throw new Error(MessageManager.getString("error.invalid_separator_parameter"));
       }
     }
     int r = 255;
@@ -2077,10 +2088,12 @@ public class JalviewLite extends Applet implements
             {
               String sequence = applet.getParameter("PDBSEQ");
               if (sequence != null)
+              {
                 seqs = new SequenceI[]
                 { matcher == null ? (Sequence) newAlignFrame
                         .getAlignViewport().getAlignment()
                         .findName(sequence) : matcher.findIdMatch(sequence) };
+              }
 
             }
             else
@@ -2140,6 +2153,8 @@ public class JalviewLite extends Applet implements
                 if (seqs[i] != null)
                 {
                   ((Sequence) seqs[i]).addPDBId(pdb);
+                  StructureSelectionManager.getStructureSelectionManager(
+                          applet).registerPDBEntry(pdb);
                 }
                 else
                 {
@@ -2324,7 +2339,9 @@ public class JalviewLite extends Applet implements
     // note separator local variable intentionally masks object field
     int seplen = separator.length();
     if (list == null || list.equals("") || list.equals(separator))
+    {
       return null;
+    }
     java.util.Vector jv = new Vector();
     int cp = 0, pos;
     while ((pos = list.indexOf(separator, cp)) > cp)