X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLite.java;h=ffdbb1b3b6930101f0b1ccb09c3c56ebd46b60cd;hb=855f7a4bb3e8d5fcfa9059df64262fc73f0164be;hp=e01e0e8243ba25d2417e43c40f9bb87935ecccdb;hpb=220e8965fa4ae5e2bff920cd1223c5a084d7375b;p=jalview.git

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index e01e0e8..ffdbb1b 100755
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -150,7 +150,7 @@ public class JalviewLite
 
   boolean embedded = false;
 
-  public boolean jmolAvailable = true;
+  public boolean jmolAvailable = false;
 
   /**
    * init method for Jalview Applet
@@ -159,13 +159,15 @@ public class JalviewLite
   {
     try
     {
-      Class.forName("org.jmol.adapter.smarter.SmarterJmolAdapter");
-
-      jmolAvailable = true;
+      if (!System.getProperty("java.version").startsWith("1.1"))
+      {
+        Class.forName("org.jmol.adapter.smarter.SmarterJmolAdapter");
+        jmolAvailable = true;
+      }
     }
     catch (java.lang.ClassNotFoundException ex)
     {
-      System.out.println("Jmol not found - Using MCview for structures");
+      System.out.println("Jmol not available - Using MCview for structures");
     }
 
     int r = 255;
@@ -549,6 +551,10 @@ public class JalviewLite
 
           pdb.setFile(param);
 
+          for(int i=0; i<seqs.length; i++)
+          {
+            ((Sequence)seqs[i]).addPDBId(pdb);
+          }
 
           if (jmolAvailable)
             new jalview.appletgui.AppletJmol(pdb,