X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLiteURLRetrieve.java;fp=src%2Fjalview%2Fbin%2FJalviewLiteURLRetrieve.java;h=4705f20ea757cefdb45f29e3e90528bea323e39d;hb=e83ce5d8ef826fc0b509a51f154abdf734501077;hp=f2ffda58222a7190b64c846418a508667871d5f3;hpb=786475501a15799d7c4058dbf74e4bf896d03736;p=jalview.git

diff --git a/src/jalview/bin/JalviewLiteURLRetrieve.java b/src/jalview/bin/JalviewLiteURLRetrieve.java
index f2ffda5..4705f20 100644
--- a/src/jalview/bin/JalviewLiteURLRetrieve.java
+++ b/src/jalview/bin/JalviewLiteURLRetrieve.java
@@ -64,8 +64,9 @@ public class JalviewLiteURLRetrieve extends Applet
     DataSourceType protocol = null;
     try
     {
-      System.out.println("Loading thread started with:\n>>file\n" + file
-              + ">>endfile");
+      jalview.bin.Console
+              .outPrintln("Loading thread started with:\n>>file\n" + file
+                      + ">>endfile");
       // This might throw a security exception in certain browsers
       // Netscape Communicator for instance.
       try
@@ -77,7 +78,7 @@ public class JalviewLiteURLRetrieve extends Applet
           rtn = true;
           is.close();
         }
-        System.err.println("Resource '" + file + "' was "
+        jalview.bin.Console.errPrintln("Resource '" + file + "' was "
                 + (rtn ? "" : "not") + " located by classloader.");
         if (rtn)
         {
@@ -86,7 +87,7 @@ public class JalviewLiteURLRetrieve extends Applet
 
       } catch (Exception ex)
       {
-        System.out.println(
+        jalview.bin.Console.outPrintln(
                 "Exception checking resources: " + file + " " + ex);
       }
       if (file.indexOf("://") > -1)
@@ -99,7 +100,7 @@ public class JalviewLiteURLRetrieve extends Applet
         protocol = DataSourceType.FILE;
       }
 
-      System.out.println("Trying to get contents of resource:");
+      jalview.bin.Console.outPrintln("Trying to get contents of resource:");
       FileParse fp = new FileParse(file, protocol);
       if (fp.isValid())
       {
@@ -112,7 +113,7 @@ public class JalviewLiteURLRetrieve extends Applet
       }
       else
       {
-        System.out.println("Resource at " + file
+        jalview.bin.Console.outPrintln("Resource at " + file
                 + " cannot be read with protocol==" + protocol);
         return;
       }
@@ -121,11 +122,12 @@ public class JalviewLiteURLRetrieve extends Applet
       if (format == null)
       {
         format = new IdentifyFile().identify(file, protocol);
-        System.out.println("Format is " + format);
+        jalview.bin.Console.outPrintln("Format is " + format);
       }
       else
       {
-        System.out.println("User specified Format is " + format);
+        jalview.bin.Console
+                .outPrintln("User specified Format is " + format);
       }
       AlignmentI al = null;
       try
@@ -133,17 +135,17 @@ public class JalviewLiteURLRetrieve extends Applet
         al = new AppletFormatAdapter().readFile(file, protocol, format);
       } catch (java.io.IOException ex)
       {
-        System.err.println("Failed to open the file.");
+        jalview.bin.Console.errPrintln("Failed to open the file.");
         ex.printStackTrace();
       }
       if (al != null)
       {
-        System.out.println(new AppletFormatAdapter()
+        jalview.bin.Console.outPrintln(new AppletFormatAdapter()
                 .formatSequences(FileFormat.Fasta, al, false));
       }
     } catch (Exception e)
     {
-      System.err.println("bailing out : Unexpected exception:");
+      jalview.bin.Console.errPrintln("bailing out : Unexpected exception:");
       e.printStackTrace();
     }
   }