X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLiteURLRetrieve.java;h=f84cd0788a8917f81d2b40bba8f0a7e14aa582d9;hb=aa91e8c4561c2dd0f18760e18fb0052979733bf8;hp=a8bb153f5ecd4244034788f2eff41886dc44f127;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git diff --git a/src/jalview/bin/JalviewLiteURLRetrieve.java b/src/jalview/bin/JalviewLiteURLRetrieve.java index a8bb153..f84cd07 100644 --- a/src/jalview/bin/JalviewLiteURLRetrieve.java +++ b/src/jalview/bin/JalviewLiteURLRetrieve.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,9 +20,10 @@ */ package jalview.bin; -import jalview.datamodel.Alignment; +import jalview.datamodel.AlignmentI; import jalview.io.AppletFormatAdapter; import jalview.io.FileParse; +import jalview.io.IdentifyFile; import java.applet.Applet; import java.io.InputStream; @@ -113,14 +114,14 @@ public class JalviewLiteURLRetrieve extends Applet String format = getParameter("format"); if (format == null || format.length() == 0) { - format = new jalview.io.IdentifyFile().Identify(file, protocol); + format = new IdentifyFile().Identify(file, protocol); System.out.println("Format is " + format); } else { System.out.println("User specified Format is " + format); } - Alignment al = null; + AlignmentI al = null; try { al = new AppletFormatAdapter().readFile(file, protocol, format);