X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLiteURLRetrieve.java;h=fd8802812a87ba7a9486abd98844cac51a275fba;hb=refs%2Fheads%2Freleases%2FRelease_2_10_0_Branch;hp=65ec11a1566d70ee378c384d09d77eefa55dc624;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git diff --git a/src/jalview/bin/JalviewLiteURLRetrieve.java b/src/jalview/bin/JalviewLiteURLRetrieve.java index 65ec11a..fd88028 100644 --- a/src/jalview/bin/JalviewLiteURLRetrieve.java +++ b/src/jalview/bin/JalviewLiteURLRetrieve.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,7 +20,7 @@ */ package jalview.bin; -import jalview.datamodel.Alignment; +import jalview.datamodel.AlignmentI; import jalview.io.AppletFormatAdapter; import jalview.io.FileParse; @@ -113,14 +113,14 @@ public class JalviewLiteURLRetrieve extends Applet String format = getParameter("format"); if (format == null || format.length() == 0) { - format = new jalview.io.IdentifyFile().Identify(file, protocol); + format = new jalview.io.IdentifyFile().identify(file, protocol); System.out.println("Format is " + format); } else { System.out.println("User specified Format is " + format); } - Alignment al = null; + AlignmentI al = null; try { al = new AppletFormatAdapter().readFile(file, protocol, format);