X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FAlignment.java;h=9a38f10c1d7c794c3d3d412fca7cb8277693543d;hb=aad4f693fc478138fd225741acf1f8d44defd162;hp=644cd031791a5b4f2738158d18be25f9da06a977;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git

diff --git a/src/jalview/binding/Alignment.java b/src/jalview/binding/Alignment.java
index 644cd03..9a38f10 100755
--- a/src/jalview/binding/Alignment.java
+++ b/src/jalview/binding/Alignment.java
@@ -1,29 +1,10 @@
 /*
- * This class was automatically generated with
+ * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
  */
 
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-
 package jalview.binding;
 
   //---------------------------------/
@@ -42,7 +23,7 @@ import org.xml.sax.ContentHandler;
 
 /**
  * Class Alignment.
- *
+ * 
  * @version $Revision$ $Date$
  */
 public class Alignment implements java.io.Serializable {
@@ -78,31 +59,31 @@ public class Alignment implements java.io.Serializable {
 
     /**
      * Returns the value of field 'annotation'.
-     *
+     * 
      * @return Annotation
      * @return the value of field 'annotation'.
      */
     public jalview.binding.Annotation getAnnotation()
     {
         return this._annotation;
-    } //-- jalview.binding.Annotation getAnnotation()
+    } //-- jalview.binding.Annotation getAnnotation() 
 
     /**
      * Returns the value of field 'sequenceSet'.
-     *
+     * 
      * @return SequenceSet
      * @return the value of field 'sequenceSet'.
      */
     public jalview.binding.SequenceSet getSequenceSet()
     {
         return this._sequenceSet;
-    } //-- jalview.binding.SequenceSet getSequenceSet()
+    } //-- jalview.binding.SequenceSet getSequenceSet() 
 
     /**
      * Method isValid
-     *
-     *
-     *
+     * 
+     * 
+     * 
      * @return boolean
      */
     public boolean isValid()
@@ -114,61 +95,61 @@ public class Alignment implements java.io.Serializable {
             return false;
         }
         return true;
-    } //-- boolean isValid()
+    } //-- boolean isValid() 
 
     /**
      * Method marshal
-     *
-     *
-     *
+     * 
+     * 
+     * 
      * @param out
      */
     public void marshal(java.io.Writer out)
         throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
     {
-
+        
         Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer)
+    } //-- void marshal(java.io.Writer) 
 
     /**
      * Method marshal
-     *
-     *
-     *
+     * 
+     * 
+     * 
      * @param handler
      */
     public void marshal(org.xml.sax.ContentHandler handler)
         throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
     {
-
+        
         Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler)
+    } //-- void marshal(org.xml.sax.ContentHandler) 
 
     /**
      * Sets the value of field 'annotation'.
-     *
+     * 
      * @param annotation the value of field 'annotation'.
      */
     public void setAnnotation(jalview.binding.Annotation annotation)
     {
         this._annotation = annotation;
-    } //-- void setAnnotation(jalview.binding.Annotation)
+    } //-- void setAnnotation(jalview.binding.Annotation) 
 
     /**
      * Sets the value of field 'sequenceSet'.
-     *
+     * 
      * @param sequenceSet the value of field 'sequenceSet'.
      */
     public void setSequenceSet(jalview.binding.SequenceSet sequenceSet)
     {
         this._sequenceSet = sequenceSet;
-    } //-- void setSequenceSet(jalview.binding.SequenceSet)
+    } //-- void setSequenceSet(jalview.binding.SequenceSet) 
 
     /**
      * Method unmarshal
-     *
-     *
-     *
+     * 
+     * 
+     * 
      * @param reader
      * @return Object
      */
@@ -176,17 +157,17 @@ public class Alignment implements java.io.Serializable {
         throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
     {
         return (jalview.binding.Alignment) Unmarshaller.unmarshal(jalview.binding.Alignment.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader)
+    } //-- java.lang.Object unmarshal(java.io.Reader) 
 
     /**
      * Method validate
-     *
+     * 
      */
     public void validate()
         throws org.exolab.castor.xml.ValidationException
     {
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
         validator.validate(this);
-    } //-- void validate()
+    } //-- void validate() 
 
 }