X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FAnnotationElement.java;h=16c3dab0c9962bcb27acfc8d0846ac61df915a20;hb=258c0056231d8a97c1d40dd665260e7814d11206;hp=e4aec318c88937edd816a9c6948176c5314d5da0;hpb=c68ce4c63bd79f23b87aac3eb0afa7f6b42a3098;p=jalview.git

diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java
index e4aec31..16c3dab 100755
--- a/src/jalview/binding/AnnotationElement.java
+++ b/src/jalview/binding/AnnotationElement.java
@@ -1,36 +1,36 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
  */
-
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
 import org.exolab.castor.xml.MarshalException;
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 import org.exolab.castor.xml.ValidationException;
+
 import org.xml.sax.ContentHandler;
 
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+
+
 /**
  * Class AnnotationElement.
- * 
+ *
  * @version $Revision$ $Date$
  */
-public class AnnotationElement implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
+public class AnnotationElement implements java.io.Serializable
+{
+    //--------------------------/
+    //- Class/Member Variables -/
     //--------------------------/
 
     /**
@@ -68,239 +68,276 @@ public class AnnotationElement implements java.io.Serializable {
      */
     private boolean _has_value;
 
-
-      //----------------/
-     //- Constructors -/
     //----------------/
-
-    public AnnotationElement() {
+    //- Constructors -/
+    //----------------/
+    public AnnotationElement()
+    {
         super();
-    } //-- jalview.binding.AnnotationElement()
-
+    }
 
-      //-----------/
-     //- Methods -/
+    //-- jalview.binding.AnnotationElement()
     //-----------/
 
     /**
-     * Method deletePosition
-     * 
+     * DOCUMENT ME!
      */
     public void deletePosition()
     {
-        this._has_position= false;
-    } //-- void deletePosition() 
+        this._has_position = false;
+    }
+
+    //-- void deletePosition() 
 
     /**
      * Method deleteValue
-     * 
+     *
      */
     public void deleteValue()
     {
-        this._has_value= false;
-    } //-- void deleteValue() 
+        this._has_value = false;
+    }
+
+    //-- void deleteValue() 
 
     /**
      * Returns the value of field 'description'.
-     * 
+     *
      * @return String
      * @return the value of field 'description'.
      */
     public java.lang.String getDescription()
     {
         return this._description;
-    } //-- java.lang.String getDescription() 
+    }
+
+    //-- java.lang.String getDescription() 
 
     /**
      * Returns the value of field 'displayCharacter'.
-     * 
+     *
      * @return String
      * @return the value of field 'displayCharacter'.
      */
     public java.lang.String getDisplayCharacter()
     {
         return this._displayCharacter;
-    } //-- java.lang.String getDisplayCharacter() 
+    }
+
+    //-- java.lang.String getDisplayCharacter() 
 
     /**
      * Returns the value of field 'position'.
-     * 
+     *
      * @return int
      * @return the value of field 'position'.
      */
     public int getPosition()
     {
         return this._position;
-    } //-- int getPosition() 
+    }
+
+    //-- int getPosition() 
 
     /**
      * Returns the value of field 'secondaryStructure'.
-     * 
+     *
      * @return String
      * @return the value of field 'secondaryStructure'.
      */
     public java.lang.String getSecondaryStructure()
     {
         return this._secondaryStructure;
-    } //-- java.lang.String getSecondaryStructure() 
+    }
+
+    //-- java.lang.String getSecondaryStructure() 
 
     /**
      * Returns the value of field 'value'.
-     * 
+     *
      * @return float
      * @return the value of field 'value'.
      */
     public float getValue()
     {
         return this._value;
-    } //-- float getValue() 
+    }
+
+    //-- float getValue() 
 
     /**
      * Method hasPosition
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean hasPosition()
     {
         return this._has_position;
-    } //-- boolean hasPosition() 
+    }
+
+    //-- boolean hasPosition() 
 
     /**
      * Method hasValue
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean hasValue()
     {
         return this._has_value;
-    } //-- boolean hasValue() 
+    }
+
+    //-- boolean hasValue() 
 
     /**
      * Method isValid
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean isValid()
     {
-        try {
+        try
+        {
             validate();
         }
-        catch (org.exolab.castor.xml.ValidationException vex) {
+        catch (org.exolab.castor.xml.ValidationException vex)
+        {
             return false;
         }
+
         return true;
-    } //-- boolean isValid() 
+    }
+
+    //-- boolean isValid() 
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param out
      */
     public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        
         Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
+    }
+
+    //-- void marshal(java.io.Writer) 
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param handler
      */
     public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        
         Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
+    }
+
+    //-- void marshal(org.xml.sax.ContentHandler) 
 
     /**
      * Sets the value of field 'description'.
-     * 
+     *
      * @param description the value of field 'description'.
      */
     public void setDescription(java.lang.String description)
     {
         this._description = description;
-    } //-- void setDescription(java.lang.String) 
+    }
+
+    //-- void setDescription(java.lang.String) 
 
     /**
      * Sets the value of field 'displayCharacter'.
-     * 
+     *
      * @param displayCharacter the value of field 'displayCharacter'
      */
     public void setDisplayCharacter(java.lang.String displayCharacter)
     {
         this._displayCharacter = displayCharacter;
-    } //-- void setDisplayCharacter(java.lang.String) 
+    }
+
+    //-- void setDisplayCharacter(java.lang.String) 
 
     /**
      * Sets the value of field 'position'.
-     * 
+     *
      * @param position the value of field 'position'.
      */
     public void setPosition(int position)
     {
         this._position = position;
         this._has_position = true;
-    } //-- void setPosition(int) 
+    }
+
+    //-- void setPosition(int) 
 
     /**
      * Sets the value of field 'secondaryStructure'.
-     * 
+     *
      * @param secondaryStructure the value of field
      * 'secondaryStructure'.
      */
     public void setSecondaryStructure(java.lang.String secondaryStructure)
     {
         this._secondaryStructure = secondaryStructure;
-    } //-- void setSecondaryStructure(java.lang.String) 
+    }
+
+    //-- void setSecondaryStructure(java.lang.String) 
 
     /**
      * Sets the value of field 'value'.
-     * 
+     *
      * @param value the value of field 'value'.
      */
     public void setValue(float value)
     {
         this._value = value;
         this._has_value = true;
-    } //-- void setValue(float) 
+    }
+
+    //-- void setValue(float) 
 
     /**
      * Method unmarshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param reader
      * @return Object
      */
     public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
+        return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class,
+            reader);
+    }
+
+    //-- java.lang.Object unmarshal(java.io.Reader) 
 
     /**
      * Method validate
-     * 
+     *
      */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
+    public void validate() throws org.exolab.castor.xml.ValidationException
     {
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
         validator.validate(this);
-    } //-- void validate() 
+    }
 
+    //-- void validate() 
 }