X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FAnnotationElement.java;h=e4aec318c88937edd816a9c6948176c5314d5da0;hb=0e601aad1c53321613b6fe6727849f37eab89f48;hp=211810dcb59a9c7078b4fc32e25d035a4a501908;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java index 211810d..e4aec31 100755 --- a/src/jalview/binding/AnnotationElement.java +++ b/src/jalview/binding/AnnotationElement.java @@ -1,29 +1,10 @@ /* - * This class was automatically generated with + * This class was automatically generated with * Castor 0.9.6, using an XML * Schema. * $Id$ */ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ - package jalview.binding; //---------------------------------/ @@ -42,7 +23,7 @@ import org.xml.sax.ContentHandler; /** * Class AnnotationElement. - * + * * @version $Revision$ $Date$ */ public class AnnotationElement implements java.io.Serializable { @@ -103,106 +84,106 @@ public class AnnotationElement implements java.io.Serializable { /** * Method deletePosition - * + * */ public void deletePosition() { this._has_position= false; - } //-- void deletePosition() + } //-- void deletePosition() /** * Method deleteValue - * + * */ public void deleteValue() { this._has_value= false; - } //-- void deleteValue() + } //-- void deleteValue() /** * Returns the value of field 'description'. - * + * * @return String * @return the value of field 'description'. */ public java.lang.String getDescription() { return this._description; - } //-- java.lang.String getDescription() + } //-- java.lang.String getDescription() /** * Returns the value of field 'displayCharacter'. - * + * * @return String * @return the value of field 'displayCharacter'. */ public java.lang.String getDisplayCharacter() { return this._displayCharacter; - } //-- java.lang.String getDisplayCharacter() + } //-- java.lang.String getDisplayCharacter() /** * Returns the value of field 'position'. - * + * * @return int * @return the value of field 'position'. */ public int getPosition() { return this._position; - } //-- int getPosition() + } //-- int getPosition() /** * Returns the value of field 'secondaryStructure'. - * + * * @return String * @return the value of field 'secondaryStructure'. */ public java.lang.String getSecondaryStructure() { return this._secondaryStructure; - } //-- java.lang.String getSecondaryStructure() + } //-- java.lang.String getSecondaryStructure() /** * Returns the value of field 'value'. - * + * * @return float * @return the value of field 'value'. */ public float getValue() { return this._value; - } //-- float getValue() + } //-- float getValue() /** * Method hasPosition - * - * - * + * + * + * * @return boolean */ public boolean hasPosition() { return this._has_position; - } //-- boolean hasPosition() + } //-- boolean hasPosition() /** * Method hasValue - * - * - * + * + * + * * @return boolean */ public boolean hasValue() { return this._has_value; - } //-- boolean hasValue() + } //-- boolean hasValue() /** * Method isValid - * - * - * + * + * + * * @return boolean */ public boolean isValid() @@ -214,94 +195,94 @@ public class AnnotationElement implements java.io.Serializable { return false; } return true; - } //-- boolean isValid() + } //-- boolean isValid() /** * Method marshal - * - * - * + * + * + * * @param out */ public void marshal(java.io.Writer out) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - + Marshaller.marshal(this, out); - } //-- void marshal(java.io.Writer) + } //-- void marshal(java.io.Writer) /** * Method marshal - * - * - * + * + * + * * @param handler */ public void marshal(org.xml.sax.ContentHandler handler) throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - + Marshaller.marshal(this, handler); - } //-- void marshal(org.xml.sax.ContentHandler) + } //-- void marshal(org.xml.sax.ContentHandler) /** * Sets the value of field 'description'. - * + * * @param description the value of field 'description'. */ public void setDescription(java.lang.String description) { this._description = description; - } //-- void setDescription(java.lang.String) + } //-- void setDescription(java.lang.String) /** * Sets the value of field 'displayCharacter'. - * + * * @param displayCharacter the value of field 'displayCharacter' */ public void setDisplayCharacter(java.lang.String displayCharacter) { this._displayCharacter = displayCharacter; - } //-- void setDisplayCharacter(java.lang.String) + } //-- void setDisplayCharacter(java.lang.String) /** * Sets the value of field 'position'. - * + * * @param position the value of field 'position'. */ public void setPosition(int position) { this._position = position; this._has_position = true; - } //-- void setPosition(int) + } //-- void setPosition(int) /** * Sets the value of field 'secondaryStructure'. - * + * * @param secondaryStructure the value of field * 'secondaryStructure'. */ public void setSecondaryStructure(java.lang.String secondaryStructure) { this._secondaryStructure = secondaryStructure; - } //-- void setSecondaryStructure(java.lang.String) + } //-- void setSecondaryStructure(java.lang.String) /** * Sets the value of field 'value'. - * + * * @param value the value of field 'value'. */ public void setValue(float value) { this._value = value; this._has_value = true; - } //-- void setValue(float) + } //-- void setValue(float) /** * Method unmarshal - * - * - * + * + * + * * @param reader * @return Object */ @@ -309,17 +290,17 @@ public class AnnotationElement implements java.io.Serializable { throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, reader); - } //-- java.lang.Object unmarshal(java.io.Reader) + } //-- java.lang.Object unmarshal(java.io.Reader) /** * Method validate - * + * */ public void validate() throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } //-- void validate() + } //-- void validate() }