X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FAnnotationElement.java;h=e4aec318c88937edd816a9c6948176c5314d5da0;hb=e3cad17c5dba620dafc8459295ecc959cbe52938;hp=3c6eba4053d9deb192726137bbf134cb36ca0603;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java index 3c6eba4..e4aec31 100755 --- a/src/jalview/binding/AnnotationElement.java +++ b/src/jalview/binding/AnnotationElement.java @@ -1,53 +1,36 @@ /* - * This class was automatically generated with + * This class was automatically generated with * Castor 0.9.6, using an XML * Schema. * $Id$ */ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package jalview.binding; - -import org.exolab.castor.xml.MarshalException; -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; -import org.xml.sax.ContentHandler; +package jalview.binding; + //---------------------------------/ + //- Imported classes and packages -/ //---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ + import java.io.IOException; import java.io.Reader; import java.io.Serializable; import java.io.Writer; - +import org.exolab.castor.xml.MarshalException; +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; +import org.exolab.castor.xml.ValidationException; +import org.xml.sax.ContentHandler; /** * Class AnnotationElement. - * + * * @version $Revision$ $Date$ */ public class AnnotationElement implements java.io.Serializable { - //--------------------------/ - //- Class/Member Variables -/ + + + //--------------------------/ + //- Class/Member Variables -/ //--------------------------/ /** @@ -85,230 +68,239 @@ public class AnnotationElement implements java.io.Serializable { */ private boolean _has_value; + + //----------------/ + //- Constructors -/ //----------------/ - //- Constructors -/ - //----------------/ + public AnnotationElement() { super(); - } - //-- jalview.binding.AnnotationElement() - //-----------/ + } //-- jalview.binding.AnnotationElement() - public void deletePosition() { - this._has_position = false; - } - //-- void deletePosition() + + //-----------/ + //- Methods -/ + //-----------/ + + /** + * Method deletePosition + * + */ + public void deletePosition() + { + this._has_position= false; + } //-- void deletePosition() /** * Method deleteValue - * + * */ - public void deleteValue() { - this._has_value = false; - } - //-- void deleteValue() + public void deleteValue() + { + this._has_value= false; + } //-- void deleteValue() /** * Returns the value of field 'description'. - * + * * @return String * @return the value of field 'description'. */ - public java.lang.String getDescription() { + public java.lang.String getDescription() + { return this._description; - } - //-- java.lang.String getDescription() + } //-- java.lang.String getDescription() /** * Returns the value of field 'displayCharacter'. - * + * * @return String * @return the value of field 'displayCharacter'. */ - public java.lang.String getDisplayCharacter() { + public java.lang.String getDisplayCharacter() + { return this._displayCharacter; - } - //-- java.lang.String getDisplayCharacter() + } //-- java.lang.String getDisplayCharacter() /** * Returns the value of field 'position'. - * + * * @return int * @return the value of field 'position'. */ - public int getPosition() { + public int getPosition() + { return this._position; - } - //-- int getPosition() + } //-- int getPosition() /** * Returns the value of field 'secondaryStructure'. - * + * * @return String * @return the value of field 'secondaryStructure'. */ - public java.lang.String getSecondaryStructure() { + public java.lang.String getSecondaryStructure() + { return this._secondaryStructure; - } - //-- java.lang.String getSecondaryStructure() + } //-- java.lang.String getSecondaryStructure() /** * Returns the value of field 'value'. - * + * * @return float * @return the value of field 'value'. */ - public float getValue() { + public float getValue() + { return this._value; - } - //-- float getValue() + } //-- float getValue() /** * Method hasPosition - * - * - * + * + * + * * @return boolean */ - public boolean hasPosition() { + public boolean hasPosition() + { return this._has_position; - } - //-- boolean hasPosition() + } //-- boolean hasPosition() /** * Method hasValue - * - * - * + * + * + * * @return boolean */ - public boolean hasValue() { + public boolean hasValue() + { return this._has_value; - } - //-- boolean hasValue() + } //-- boolean hasValue() /** * Method isValid - * - * - * + * + * + * * @return boolean */ - public boolean isValid() { + public boolean isValid() + { try { validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { + } + catch (org.exolab.castor.xml.ValidationException vex) { return false; } - return true; - } - //-- boolean isValid() + } //-- boolean isValid() /** * Method marshal - * - * - * + * + * + * * @param out */ public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, out); - } - //-- void marshal(java.io.Writer) + } //-- void marshal(java.io.Writer) /** * Method marshal - * - * - * + * + * + * * @param handler */ public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, handler); - } - //-- void marshal(org.xml.sax.ContentHandler) + } //-- void marshal(org.xml.sax.ContentHandler) /** * Sets the value of field 'description'. - * + * * @param description the value of field 'description'. */ - public void setDescription(java.lang.String description) { + public void setDescription(java.lang.String description) + { this._description = description; - } - //-- void setDescription(java.lang.String) + } //-- void setDescription(java.lang.String) /** * Sets the value of field 'displayCharacter'. - * + * * @param displayCharacter the value of field 'displayCharacter' */ - public void setDisplayCharacter(java.lang.String displayCharacter) { + public void setDisplayCharacter(java.lang.String displayCharacter) + { this._displayCharacter = displayCharacter; - } - //-- void setDisplayCharacter(java.lang.String) + } //-- void setDisplayCharacter(java.lang.String) /** * Sets the value of field 'position'. - * + * * @param position the value of field 'position'. */ - public void setPosition(int position) { + public void setPosition(int position) + { this._position = position; this._has_position = true; - } - //-- void setPosition(int) + } //-- void setPosition(int) /** * Sets the value of field 'secondaryStructure'. - * + * * @param secondaryStructure the value of field * 'secondaryStructure'. */ - public void setSecondaryStructure(java.lang.String secondaryStructure) { + public void setSecondaryStructure(java.lang.String secondaryStructure) + { this._secondaryStructure = secondaryStructure; - } - //-- void setSecondaryStructure(java.lang.String) + } //-- void setSecondaryStructure(java.lang.String) /** * Sets the value of field 'value'. - * + * * @param value the value of field 'value'. */ - public void setValue(float value) { + public void setValue(float value) + { this._value = value; this._has_value = true; - } - //-- void setValue(float) + } //-- void setValue(float) /** * Method unmarshal - * - * - * + * + * + * * @param reader * @return Object */ public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { - return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, - reader); - } - //-- java.lang.Object unmarshal(java.io.Reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, reader); + } //-- java.lang.Object unmarshal(java.io.Reader) /** * Method validate - * + * */ - public void validate() throws org.exolab.castor.xml.ValidationException { + public void validate() + throws org.exolab.castor.xml.ValidationException + { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } - //-- void validate() + } //-- void validate() + }