X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FFeature.java;h=1cb6eee4c8f4419d4721a0f401af161490e5a057;hb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;hp=d429df3c5a54f0dffb2c9c75ded95835edf9cbdd;hpb=1cc81e06ac2faa5ee4b8879e9fa019956e34259f;p=jalview.git

diff --git a/src/jalview/binding/Feature.java b/src/jalview/binding/Feature.java
index d429df3..1cb6eee 100644
--- a/src/jalview/binding/Feature.java
+++ b/src/jalview/binding/Feature.java
@@ -7,8 +7,8 @@
 
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
 //---------------------------------/
 
 import org.exolab.castor.xml.Marshaller;
@@ -19,272 +19,286 @@ import org.exolab.castor.xml.Unmarshaller;
  * 
  * @version $Revision$ $Date$
  */
-public class Feature implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _begin.
-     */
-    private int _begin;
-
-    /**
-     * keeps track of state for field: _begin
-     */
-    private boolean _has_begin;
-
-    /**
-     * Field _end.
-     */
-    private int _end;
-
-    /**
-     * keeps track of state for field: _end
-     */
-    private boolean _has_end;
-
-    /**
-     * Field _type.
-     */
-    private java.lang.String _type;
-
-    /**
-     * Field _description.
-     */
-    private java.lang.String _description;
-
-    /**
-     * Field _status.
-     */
-    private java.lang.String _status;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public Feature() {
-        super();
-    }
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     */
-    public void deleteBegin(
-    ) {
-        this._has_begin= false;
-    }
-
-    /**
-     */
-    public void deleteEnd(
-    ) {
-        this._has_end= false;
-    }
-
-    /**
-     * Returns the value of field 'begin'.
-     * 
-     * @return the value of field 'Begin'.
-     */
-    public int getBegin(
-    ) {
-        return this._begin;
-    }
-
-    /**
-     * Returns the value of field 'description'.
-     * 
-     * @return the value of field 'Description'.
-     */
-    public java.lang.String getDescription(
-    ) {
-        return this._description;
-    }
-
-    /**
-     * Returns the value of field 'end'.
-     * 
-     * @return the value of field 'End'.
-     */
-    public int getEnd(
-    ) {
-        return this._end;
-    }
-
-    /**
-     * Returns the value of field 'status'.
-     * 
-     * @return the value of field 'Status'.
-     */
-    public java.lang.String getStatus(
-    ) {
-        return this._status;
-    }
-
-    /**
-     * Returns the value of field 'type'.
-     * 
-     * @return the value of field 'Type'.
-     */
-    public java.lang.String getType(
-    ) {
-        return this._type;
-    }
-
-    /**
-     * Method hasBegin.
-     * 
-     * @return true if at least one Begin has been added
-     */
-    public boolean hasBegin(
-    ) {
-        return this._has_begin;
-    }
-
-    /**
-     * Method hasEnd.
-     * 
-     * @return true if at least one End has been added
-     */
-    public boolean hasEnd(
-    ) {
-        return this._has_end;
-    }
-
-    /**
-     * Method isValid.
-     * 
-     * @return true if this object is valid according to the schema
-     */
-    public boolean isValid(
-    ) {
-        try {
-            validate();
-        } catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    }
-
-    /**
-     * 
-     * 
-     * @param out
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     */
-    public void marshal(
-            final java.io.Writer out)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, out);
-    }
-
-    /**
-     * 
-     * 
-     * @param handler
-     * @throws java.io.IOException if an IOException occurs during
-     * marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
+public class Feature implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _begin.
+   */
+  private int _begin;
+
+  /**
+   * keeps track of state for field: _begin
+   */
+  private boolean _has_begin;
+
+  /**
+   * Field _end.
+   */
+  private int _end;
+
+  /**
+   * keeps track of state for field: _end
+   */
+  private boolean _has_end;
+
+  /**
+   * Field _type.
+   */
+  private java.lang.String _type;
+
+  /**
+   * Field _description.
+   */
+  private java.lang.String _description;
+
+  /**
+   * Field _status.
+   */
+  private java.lang.String _status;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public Feature()
+  {
+    super();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
      */
-    public void marshal(
-            final org.xml.sax.ContentHandler handler)
-    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, handler);
-    }
-
-    /**
-     * Sets the value of field 'begin'.
-     * 
-     * @param begin the value of field 'begin'.
-     */
-    public void setBegin(
-            final int begin) {
-        this._begin = begin;
-        this._has_begin = true;
-    }
-
-    /**
-     * Sets the value of field 'description'.
-     * 
-     * @param description the value of field 'description'.
-     */
-    public void setDescription(
-            final java.lang.String description) {
-        this._description = description;
-    }
-
-    /**
-     * Sets the value of field 'end'.
-     * 
-     * @param end the value of field 'end'.
-     */
-    public void setEnd(
-            final int end) {
-        this._end = end;
-        this._has_end = true;
-    }
-
-    /**
-     * Sets the value of field 'status'.
-     * 
-     * @param status the value of field 'status'.
-     */
-    public void setStatus(
-            final java.lang.String status) {
-        this._status = status;
-    }
-
-    /**
-     * Sets the value of field 'type'.
-     * 
-     * @param type the value of field 'type'.
-     */
-    public void setType(
-            final java.lang.String type) {
-        this._type = type;
-    }
-
-    /**
-     * Method unmarshal.
-     * 
-     * @param reader
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @return the unmarshaled jalview.binding.Feature
-     */
-    public static jalview.binding.Feature unmarshal(
-            final java.io.Reader reader)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        return (jalview.binding.Feature) Unmarshaller.unmarshal(jalview.binding.Feature.class, reader);
-    }
+  public void deleteBegin()
+  {
+    this._has_begin = false;
+  }
 
-    /**
-     * 
-     * 
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
+  /**
      */
-    public void validate(
-    )
-    throws org.exolab.castor.xml.ValidationException {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
+  public void deleteEnd()
+  {
+    this._has_end = false;
+  }
+
+  /**
+   * Returns the value of field 'begin'.
+   * 
+   * @return the value of field 'Begin'.
+   */
+  public int getBegin()
+  {
+    return this._begin;
+  }
+
+  /**
+   * Returns the value of field 'description'.
+   * 
+   * @return the value of field 'Description'.
+   */
+  public java.lang.String getDescription()
+  {
+    return this._description;
+  }
+
+  /**
+   * Returns the value of field 'end'.
+   * 
+   * @return the value of field 'End'.
+   */
+  public int getEnd()
+  {
+    return this._end;
+  }
+
+  /**
+   * Returns the value of field 'status'.
+   * 
+   * @return the value of field 'Status'.
+   */
+  public java.lang.String getStatus()
+  {
+    return this._status;
+  }
+
+  /**
+   * Returns the value of field 'type'.
+   * 
+   * @return the value of field 'Type'.
+   */
+  public java.lang.String getType()
+  {
+    return this._type;
+  }
+
+  /**
+   * Method hasBegin.
+   * 
+   * @return true if at least one Begin has been added
+   */
+  public boolean hasBegin()
+  {
+    return this._has_begin;
+  }
+
+  /**
+   * Method hasEnd.
+   * 
+   * @return true if at least one End has been added
+   */
+  public boolean hasEnd()
+  {
+    return this._has_end;
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid()
+  {
+    try
+    {
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex)
+    {
+      return false;
     }
+    return true;
+  }
+
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+          throws java.io.IOException,
+          org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
+   * Sets the value of field 'begin'.
+   * 
+   * @param begin
+   *          the value of field 'begin'.
+   */
+  public void setBegin(final int begin)
+  {
+    this._begin = begin;
+    this._has_begin = true;
+  }
+
+  /**
+   * Sets the value of field 'description'.
+   * 
+   * @param description
+   *          the value of field 'description'.
+   */
+  public void setDescription(final java.lang.String description)
+  {
+    this._description = description;
+  }
+
+  /**
+   * Sets the value of field 'end'.
+   * 
+   * @param end
+   *          the value of field 'end'.
+   */
+  public void setEnd(final int end)
+  {
+    this._end = end;
+    this._has_end = true;
+  }
+
+  /**
+   * Sets the value of field 'status'.
+   * 
+   * @param status
+   *          the value of field 'status'.
+   */
+  public void setStatus(final java.lang.String status)
+  {
+    this._status = status;
+  }
+
+  /**
+   * Sets the value of field 'type'.
+   * 
+   * @param type
+   *          the value of field 'type'.
+   */
+  public void setType(final java.lang.String type)
+  {
+    this._type = type;
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled jalview.binding.Feature
+   */
+  public static jalview.binding.Feature unmarshal(
+          final java.io.Reader reader)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.binding.Feature) Unmarshaller.unmarshal(
+            jalview.binding.Feature.class, reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
 
 }