X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJSeq.java;h=49334e104f6b36cdc2ce33f397359d17bf8cf7c1;hb=7a0d503181fe41452120a8a02ca63476392aa08c;hp=68d545f12822a6db896309bdd245e2d7c9221e7e;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java
index 68d545f..49334e1 100644
--- a/src/jalview/binding/JSeq.java
+++ b/src/jalview/binding/JSeq.java
@@ -1,31 +1,16 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.binding;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
-import jalview.util.MessageManager;
-
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -244,11 +229,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-      		  "getFeatures",
-      		  Integer.valueOf(index).toString(),
-      		  Integer.valueOf((this._featuresList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException(
+              "getFeatures: Index value '" + index + "' not in range [0.."
+                      + (this._featuresList.size() - 1) + "]");
     }
 
     return (jalview.binding.Features) _featuresList.get(index);
@@ -303,11 +286,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-        		  "getPdbids",
-        		  Integer.valueOf(index).toString(),
-        		  Integer.valueOf((this._pdbidsList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException(
+              "getPdbids: Index value '" + index + "' not in range [0.."
+                      + (this._pdbidsList.size() - 1) + "]");
     }
 
     return (jalview.binding.Pdbids) _pdbidsList.get(index);
@@ -543,11 +524,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-      		  "setFeatures",
-      		  Integer.valueOf(index).toString(),
-      		  Integer.valueOf((this._featuresList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException(
+              "setFeatures: Index value '" + index + "' not in range [0.."
+                      + (this._featuresList.size() - 1) + "]");
     }
 
     this._featuresList.set(index, vFeatures);
@@ -596,11 +575,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-        		  "setPdbids",
-        		  Integer.valueOf(index).toString(),
-        		  Integer.valueOf((this._pdbidsList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException(
+              "setPdbids: Index value '" + index + "' not in range [0.."
+                      + (this._pdbidsList.size() - 1) + "]");
     }
 
     this._pdbidsList.set(index, vPdbids);
@@ -649,8 +626,8 @@ public class JSeq implements java.io.Serializable
           throws org.exolab.castor.xml.MarshalException,
           org.exolab.castor.xml.ValidationException
   {
-    return (jalview.binding.JSeq) Unmarshaller.unmarshal(
-            jalview.binding.JSeq.class, reader);
+    return (jalview.binding.JSeq) Unmarshaller
+            .unmarshal(jalview.binding.JSeq.class, reader);
   }
 
   /**