X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJSeq.java;h=49334e104f6b36cdc2ce33f397359d17bf8cf7c1;hb=9109818e704dd0945567b234af8f3d34ba4b2b67;hp=cbc949a153cc5815aec81dd9e3d3343b08f57418;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java
old mode 100755
new mode 100644
index cbc949a..49334e1
--- a/src/jalview/binding/JSeq.java
+++ b/src/jalview/binding/JSeq.java
@@ -1,20 +1,10 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.binding;
 
 //---------------------------------/
@@ -239,9 +229,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-      throw new IndexOutOfBoundsException("getFeatures: Index value '"
-              + index + "' not in range [0.."
-              + (this._featuresList.size() - 1) + "]");
+      throw new IndexOutOfBoundsException(
+              "getFeatures: Index value '" + index + "' not in range [0.."
+                      + (this._featuresList.size() - 1) + "]");
     }
 
     return (jalview.binding.Features) _featuresList.get(index);
@@ -296,9 +286,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-      throw new IndexOutOfBoundsException("getPdbids: Index value '"
-              + index + "' not in range [0.."
-              + (this._pdbidsList.size() - 1) + "]");
+      throw new IndexOutOfBoundsException(
+              "getPdbids: Index value '" + index + "' not in range [0.."
+                      + (this._pdbidsList.size() - 1) + "]");
     }
 
     return (jalview.binding.Pdbids) _pdbidsList.get(index);
@@ -534,9 +524,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-      throw new IndexOutOfBoundsException("setFeatures: Index value '"
-              + index + "' not in range [0.."
-              + (this._featuresList.size() - 1) + "]");
+      throw new IndexOutOfBoundsException(
+              "setFeatures: Index value '" + index + "' not in range [0.."
+                      + (this._featuresList.size() - 1) + "]");
     }
 
     this._featuresList.set(index, vFeatures);
@@ -585,9 +575,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-      throw new IndexOutOfBoundsException("setPdbids: Index value '"
-              + index + "' not in range [0.."
-              + (this._pdbidsList.size() - 1) + "]");
+      throw new IndexOutOfBoundsException(
+              "setPdbids: Index value '" + index + "' not in range [0.."
+                      + (this._pdbidsList.size() - 1) + "]");
     }
 
     this._pdbidsList.set(index, vPdbids);
@@ -636,8 +626,8 @@ public class JSeq implements java.io.Serializable
           throws org.exolab.castor.xml.MarshalException,
           org.exolab.castor.xml.ValidationException
   {
-    return (jalview.binding.JSeq) Unmarshaller.unmarshal(
-            jalview.binding.JSeq.class, reader);
+    return (jalview.binding.JSeq) Unmarshaller
+            .unmarshal(jalview.binding.JSeq.class, reader);
   }
 
   /**