X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJSeq.java;h=751409f0b161223878e176c9ab5f6389894670bc;hb=064f2fdaa463367f8bf7e6aea5e7fc6a32170138;hp=cabf5c85e6f8d39eb88e4594bfeea8da581166ee;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java index cabf5c8..751409f 100755 --- a/src/jalview/binding/JSeq.java +++ b/src/jalview/binding/JSeq.java @@ -1,53 +1,36 @@ /* - * This class was automatically generated with + * This class was automatically generated with * Castor 0.9.6, using an XML * Schema. * $Id$ */ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package jalview.binding; - -import org.exolab.castor.xml.MarshalException; -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; -import org.xml.sax.ContentHandler; +package jalview.binding; + //---------------------------------/ + //- Imported classes and packages -/ //---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ + import java.io.IOException; import java.io.Reader; import java.io.Serializable; import java.io.Writer; - +import org.exolab.castor.xml.MarshalException; +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; +import org.exolab.castor.xml.ValidationException; +import org.xml.sax.ContentHandler; /** * Class JSeq. - * + * * @version $Revision$ $Date$ */ public class JSeq implements java.io.Serializable { - //--------------------------/ - //- Class/Member Variables -/ + + + //--------------------------/ + //- Class/Member Variables -/ //--------------------------/ /** @@ -90,252 +73,261 @@ public class JSeq implements java.io.Serializable { */ private boolean _has_id; + + //----------------/ + //- Constructors -/ //----------------/ - //- Constructors -/ - //----------------/ + public JSeq() { super(); - } - //-- jalview.binding.JSeq() - //-----------/ + } //-- jalview.binding.JSeq() - public void deleteColour() { - this._has_colour = false; - } - //-- void deleteColour() + + //-----------/ + //- Methods -/ + //-----------/ + + /** + * Method deleteColour + * + */ + public void deleteColour() + { + this._has_colour= false; + } //-- void deleteColour() /** * Method deleteEnd - * + * */ - public void deleteEnd() { - this._has_end = false; - } - //-- void deleteEnd() + public void deleteEnd() + { + this._has_end= false; + } //-- void deleteEnd() /** * Method deleteId - * + * */ - public void deleteId() { - this._has_id = false; - } - //-- void deleteId() + public void deleteId() + { + this._has_id= false; + } //-- void deleteId() /** * Method deleteStart - * + * */ - public void deleteStart() { - this._has_start = false; - } - //-- void deleteStart() + public void deleteStart() + { + this._has_start= false; + } //-- void deleteStart() /** * Returns the value of field 'colour'. - * + * * @return int * @return the value of field 'colour'. */ - public int getColour() { + public int getColour() + { return this._colour; - } - //-- int getColour() + } //-- int getColour() /** * Returns the value of field 'end'. - * + * * @return int * @return the value of field 'end'. */ - public int getEnd() { + public int getEnd() + { return this._end; - } - //-- int getEnd() + } //-- int getEnd() /** * Returns the value of field 'id'. - * + * * @return int * @return the value of field 'id'. */ - public int getId() { + public int getId() + { return this._id; - } - //-- int getId() + } //-- int getId() /** * Returns the value of field 'start'. - * + * * @return int * @return the value of field 'start'. */ - public int getStart() { + public int getStart() + { return this._start; - } - //-- int getStart() + } //-- int getStart() /** * Method hasColour - * - * - * + * + * + * * @return boolean */ - public boolean hasColour() { + public boolean hasColour() + { return this._has_colour; - } - //-- boolean hasColour() + } //-- boolean hasColour() /** * Method hasEnd - * - * - * + * + * + * * @return boolean */ - public boolean hasEnd() { + public boolean hasEnd() + { return this._has_end; - } - //-- boolean hasEnd() + } //-- boolean hasEnd() /** * Method hasId - * - * - * + * + * + * * @return boolean */ - public boolean hasId() { + public boolean hasId() + { return this._has_id; - } - //-- boolean hasId() + } //-- boolean hasId() /** * Method hasStart - * - * - * + * + * + * * @return boolean */ - public boolean hasStart() { + public boolean hasStart() + { return this._has_start; - } - //-- boolean hasStart() + } //-- boolean hasStart() /** * Method isValid - * - * - * + * + * + * * @return boolean */ - public boolean isValid() { + public boolean isValid() + { try { validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { + } + catch (org.exolab.castor.xml.ValidationException vex) { return false; } - return true; - } - //-- boolean isValid() + } //-- boolean isValid() /** * Method marshal - * - * - * + * + * + * * @param out */ public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, out); - } - //-- void marshal(java.io.Writer) + } //-- void marshal(java.io.Writer) /** * Method marshal - * - * - * + * + * + * * @param handler */ public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, handler); - } - //-- void marshal(org.xml.sax.ContentHandler) + } //-- void marshal(org.xml.sax.ContentHandler) /** * Sets the value of field 'colour'. - * + * * @param colour the value of field 'colour'. */ - public void setColour(int colour) { + public void setColour(int colour) + { this._colour = colour; this._has_colour = true; - } - //-- void setColour(int) + } //-- void setColour(int) /** * Sets the value of field 'end'. - * + * * @param end the value of field 'end'. */ - public void setEnd(int end) { + public void setEnd(int end) + { this._end = end; this._has_end = true; - } - //-- void setEnd(int) + } //-- void setEnd(int) /** * Sets the value of field 'id'. - * + * * @param id the value of field 'id'. */ - public void setId(int id) { + public void setId(int id) + { this._id = id; this._has_id = true; - } - //-- void setId(int) + } //-- void setId(int) /** * Sets the value of field 'start'. - * + * * @param start the value of field 'start'. */ - public void setStart(int start) { + public void setStart(int start) + { this._start = start; this._has_start = true; - } - //-- void setStart(int) + } //-- void setStart(int) /** * Method unmarshal - * - * - * + * + * + * * @param reader * @return Object */ public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { - return (jalview.binding.JSeq) Unmarshaller.unmarshal(jalview.binding.JSeq.class, - reader); - } - //-- java.lang.Object unmarshal(java.io.Reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + return (jalview.binding.JSeq) Unmarshaller.unmarshal(jalview.binding.JSeq.class, reader); + } //-- java.lang.Object unmarshal(java.io.Reader) /** * Method validate - * + * */ - public void validate() throws org.exolab.castor.xml.ValidationException { + public void validate() + throws org.exolab.castor.xml.ValidationException + { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } - //-- void validate() + } //-- void validate() + }