X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJSeq.java;h=9b8ddcb54574ee491f1a34afffe8e53942c6a59b;hb=258c0056231d8a97c1d40dd665260e7814d11206;hp=751409f0b161223878e176c9ab5f6389894670bc;hpb=124589ea0c58cbb7b3788bbf13b687a0ece3c9e0;p=jalview.git

diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java
index 751409f..9b8ddcb 100755
--- a/src/jalview/binding/JSeq.java
+++ b/src/jalview/binding/JSeq.java
@@ -1,36 +1,36 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
  */
-
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
 import org.exolab.castor.xml.MarshalException;
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 import org.exolab.castor.xml.ValidationException;
+
 import org.xml.sax.ContentHandler;
 
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+
+
 /**
  * Class JSeq.
- * 
+ *
  * @version $Revision$ $Date$
  */
-public class JSeq implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
+public class JSeq implements java.io.Serializable
+{
+    //--------------------------/
+    //- Class/Member Variables -/
     //--------------------------/
 
     /**
@@ -73,261 +73,302 @@ public class JSeq implements java.io.Serializable {
      */
     private boolean _has_id;
 
-
-      //----------------/
-     //- Constructors -/
     //----------------/
-
-    public JSeq() {
+    //- Constructors -/
+    //----------------/
+    public JSeq()
+    {
         super();
-    } //-- jalview.binding.JSeq()
+    }
 
-
-      //-----------/
-     //- Methods -/
+    //-- jalview.binding.JSeq()
     //-----------/
 
     /**
-     * Method deleteColour
-     * 
+     * DOCUMENT ME!
      */
     public void deleteColour()
     {
-        this._has_colour= false;
-    } //-- void deleteColour() 
+        this._has_colour = false;
+    }
+
+    //-- void deleteColour() 
 
     /**
      * Method deleteEnd
-     * 
+     *
      */
     public void deleteEnd()
     {
-        this._has_end= false;
-    } //-- void deleteEnd() 
+        this._has_end = false;
+    }
+
+    //-- void deleteEnd() 
 
     /**
      * Method deleteId
-     * 
+     *
      */
     public void deleteId()
     {
-        this._has_id= false;
-    } //-- void deleteId() 
+        this._has_id = false;
+    }
+
+    //-- void deleteId() 
 
     /**
      * Method deleteStart
-     * 
+     *
      */
     public void deleteStart()
     {
-        this._has_start= false;
-    } //-- void deleteStart() 
+        this._has_start = false;
+    }
+
+    //-- void deleteStart() 
 
     /**
      * Returns the value of field 'colour'.
-     * 
+     *
      * @return int
      * @return the value of field 'colour'.
      */
     public int getColour()
     {
         return this._colour;
-    } //-- int getColour() 
+    }
+
+    //-- int getColour() 
 
     /**
      * Returns the value of field 'end'.
-     * 
+     *
      * @return int
      * @return the value of field 'end'.
      */
     public int getEnd()
     {
         return this._end;
-    } //-- int getEnd() 
+    }
+
+    //-- int getEnd() 
 
     /**
      * Returns the value of field 'id'.
-     * 
+     *
      * @return int
      * @return the value of field 'id'.
      */
     public int getId()
     {
         return this._id;
-    } //-- int getId() 
+    }
+
+    //-- int getId() 
 
     /**
      * Returns the value of field 'start'.
-     * 
+     *
      * @return int
      * @return the value of field 'start'.
      */
     public int getStart()
     {
         return this._start;
-    } //-- int getStart() 
+    }
+
+    //-- int getStart() 
 
     /**
      * Method hasColour
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean hasColour()
     {
         return this._has_colour;
-    } //-- boolean hasColour() 
+    }
+
+    //-- boolean hasColour() 
 
     /**
      * Method hasEnd
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean hasEnd()
     {
         return this._has_end;
-    } //-- boolean hasEnd() 
+    }
+
+    //-- boolean hasEnd() 
 
     /**
      * Method hasId
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean hasId()
     {
         return this._has_id;
-    } //-- boolean hasId() 
+    }
+
+    //-- boolean hasId() 
 
     /**
      * Method hasStart
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean hasStart()
     {
         return this._has_start;
-    } //-- boolean hasStart() 
+    }
+
+    //-- boolean hasStart() 
 
     /**
      * Method isValid
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean isValid()
     {
-        try {
+        try
+        {
             validate();
         }
-        catch (org.exolab.castor.xml.ValidationException vex) {
+        catch (org.exolab.castor.xml.ValidationException vex)
+        {
             return false;
         }
+
         return true;
-    } //-- boolean isValid() 
+    }
+
+    //-- boolean isValid() 
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param out
      */
     public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        
         Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
+    }
+
+    //-- void marshal(java.io.Writer) 
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param handler
      */
     public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        
         Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
+    }
+
+    //-- void marshal(org.xml.sax.ContentHandler) 
 
     /**
      * Sets the value of field 'colour'.
-     * 
+     *
      * @param colour the value of field 'colour'.
      */
     public void setColour(int colour)
     {
         this._colour = colour;
         this._has_colour = true;
-    } //-- void setColour(int) 
+    }
+
+    //-- void setColour(int) 
 
     /**
      * Sets the value of field 'end'.
-     * 
+     *
      * @param end the value of field 'end'.
      */
     public void setEnd(int end)
     {
         this._end = end;
         this._has_end = true;
-    } //-- void setEnd(int) 
+    }
+
+    //-- void setEnd(int) 
 
     /**
      * Sets the value of field 'id'.
-     * 
+     *
      * @param id the value of field 'id'.
      */
     public void setId(int id)
     {
         this._id = id;
         this._has_id = true;
-    } //-- void setId(int) 
+    }
+
+    //-- void setId(int) 
 
     /**
      * Sets the value of field 'start'.
-     * 
+     *
      * @param start the value of field 'start'.
      */
     public void setStart(int start)
     {
         this._start = start;
         this._has_start = true;
-    } //-- void setStart(int) 
+    }
+
+    //-- void setStart(int) 
 
     /**
      * Method unmarshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param reader
      * @return Object
      */
     public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        return (jalview.binding.JSeq) Unmarshaller.unmarshal(jalview.binding.JSeq.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
+        return (jalview.binding.JSeq) Unmarshaller.unmarshal(jalview.binding.JSeq.class,
+            reader);
+    }
+
+    //-- java.lang.Object unmarshal(java.io.Reader) 
 
     /**
      * Method validate
-     * 
+     *
      */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
+    public void validate() throws org.exolab.castor.xml.ValidationException
     {
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
         validator.validate(this);
-    } //-- void validate() 
+    }
 
+    //-- void validate() 
 }