X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJSeq.java;h=ecf1eb0433ae4fd6eb08baca645da57427171d4c;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=cbc949a153cc5815aec81dd9e3d3343b08f57418;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java
old mode 100755
new mode 100644
index cbc949a..ecf1eb0
--- a/src/jalview/binding/JSeq.java
+++ b/src/jalview/binding/JSeq.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.binding;
 
@@ -21,6 +24,8 @@ package jalview.binding;
 //- Imported classes and packages -/
 //---------------------------------/
 
+import jalview.util.MessageManager;
+
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -239,9 +244,11 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-      throw new IndexOutOfBoundsException("getFeatures: Index value '"
-              + index + "' not in range [0.."
-              + (this._featuresList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "getFeatures",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._featuresList.size() - 1)).toString()
+        })); 
     }
 
     return (jalview.binding.Features) _featuresList.get(index);
@@ -296,9 +303,11 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-      throw new IndexOutOfBoundsException("getPdbids: Index value '"
-              + index + "' not in range [0.."
-              + (this._pdbidsList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "getPdbids",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._pdbidsList.size() - 1)).toString()
+          })); 
     }
 
     return (jalview.binding.Pdbids) _pdbidsList.get(index);
@@ -534,9 +543,11 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-      throw new IndexOutOfBoundsException("setFeatures: Index value '"
-              + index + "' not in range [0.."
-              + (this._featuresList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "setFeatures",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._featuresList.size() - 1)).toString()
+        })); 
     }
 
     this._featuresList.set(index, vFeatures);
@@ -585,9 +596,11 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-      throw new IndexOutOfBoundsException("setPdbids: Index value '"
-              + index + "' not in range [0.."
-              + (this._pdbidsList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "setPdbids",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._pdbidsList.size() - 1)).toString()
+          })); 
     }
 
     this._pdbidsList.set(index, vPdbids);