X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJalviewModel.java;h=5c9be24b9d7956bc560073b6342a4b6c059124e8;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=a558b1094ebade55a88a2504e3bf8fa7137d6c3b;hpb=124589ea0c58cbb7b3788bbf13b687a0ece3c9e0;p=jalview.git diff --git a/src/jalview/binding/JalviewModel.java b/src/jalview/binding/JalviewModel.java old mode 100755 new mode 100644 index a558b10..5c9be24 --- a/src/jalview/binding/JalviewModel.java +++ b/src/jalview/binding/JalviewModel.java @@ -1,201 +1,237 @@ -/* - * This class was automatically generated with - * Castor 0.9.6, using an XML - * Schema. - * $Id$ - */ - -package jalview.binding; - - //---------------------------------/ - //- Imported classes and packages -/ -//---------------------------------/ - -import java.io.IOException; -import java.io.Reader; -import java.io.Serializable; -import java.io.Writer; -import java.util.Date; -import org.exolab.castor.xml.MarshalException; -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; -import org.xml.sax.ContentHandler; - -/** - * Class JalviewModel. - * - * @version $Revision$ $Date$ - */ -public class JalviewModel implements java.io.Serializable { - - - //--------------------------/ - //- Class/Member Variables -/ - //--------------------------/ - - /** - * Field _creationDate - */ - private java.util.Date _creationDate; - - /** - * Field _vamsasModel - */ - private jalview.binding.VamsasModel _vamsasModel; - - /** - * Field _jalviewModelSequence - */ - private jalview.binding.JalviewModelSequence _jalviewModelSequence; - - - //----------------/ - //- Constructors -/ - //----------------/ - - public JalviewModel() { - super(); - } //-- jalview.binding.JalviewModel() - - - //-----------/ - //- Methods -/ - //-----------/ - - /** - * Returns the value of field 'creationDate'. - * - * @return Date - * @return the value of field 'creationDate'. - */ - public java.util.Date getCreationDate() - { - return this._creationDate; - } //-- java.util.Date getCreationDate() - - /** - * Returns the value of field 'jalviewModelSequence'. - * - * @return JalviewModelSequence - * @return the value of field 'jalviewModelSequence'. - */ - public jalview.binding.JalviewModelSequence getJalviewModelSequence() - { - return this._jalviewModelSequence; - } //-- jalview.binding.JalviewModelSequence getJalviewModelSequence() - - /** - * Returns the value of field 'vamsasModel'. - * - * @return VamsasModel - * @return the value of field 'vamsasModel'. - */ - public jalview.binding.VamsasModel getVamsasModel() - { - return this._vamsasModel; - } //-- jalview.binding.VamsasModel getVamsasModel() - - /** - * Method isValid - * - * - * - * @return boolean - */ - public boolean isValid() - { - try { - validate(); - } - catch (org.exolab.castor.xml.ValidationException vex) { - return false; - } - return true; - } //-- boolean isValid() - - /** - * Method marshal - * - * - * - * @param out - */ - public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException - { - - Marshaller.marshal(this, out); - } //-- void marshal(java.io.Writer) - - /** - * Method marshal - * - * - * - * @param handler - */ - public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException - { - - Marshaller.marshal(this, handler); - } //-- void marshal(org.xml.sax.ContentHandler) - - /** - * Sets the value of field 'creationDate'. - * - * @param creationDate the value of field 'creationDate'. - */ - public void setCreationDate(java.util.Date creationDate) - { - this._creationDate = creationDate; - } //-- void setCreationDate(java.util.Date) - - /** - * Sets the value of field 'jalviewModelSequence'. - * - * @param jalviewModelSequence the value of field - * 'jalviewModelSequence'. - */ - public void setJalviewModelSequence(jalview.binding.JalviewModelSequence jalviewModelSequence) - { - this._jalviewModelSequence = jalviewModelSequence; - } //-- void setJalviewModelSequence(jalview.binding.JalviewModelSequence) - - /** - * Sets the value of field 'vamsasModel'. - * - * @param vamsasModel the value of field 'vamsasModel'. - */ - public void setVamsasModel(jalview.binding.VamsasModel vamsasModel) - { - this._vamsasModel = vamsasModel; - } //-- void setVamsasModel(jalview.binding.VamsasModel) - - /** - * Method unmarshal - * - * - * - * @param reader - * @return Object - */ - public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException - { - return (jalview.binding.JalviewModel) Unmarshaller.unmarshal(jalview.binding.JalviewModel.class, reader); - } //-- java.lang.Object unmarshal(java.io.Reader) - - /** - * Method validate - * - */ - public void validate() - throws org.exolab.castor.xml.ValidationException - { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); - } //-- void validate() - -} +/******************************************************************************* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + *******************************************************************************/ +/* + * This class was automatically generated with + * Castor 1.1, using an XML + * Schema. + * $Id$ + */ + +package jalview.binding; + + //---------------------------------/ + //- Imported classes and packages -/ +//---------------------------------/ + +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; + +/** + * Class JalviewModel. + * + * @version $Revision$ $Date$ + */ +public class JalviewModel implements java.io.Serializable { + + + //--------------------------/ + //- Class/Member Variables -/ + //--------------------------/ + + /** + * Field _creationDate. + */ + private java.util.Date _creationDate; + + /** + * Field _version. + */ + private java.lang.String _version; + + /** + * Field _vamsasModel. + */ + private jalview.binding.VamsasModel _vamsasModel; + + /** + * Field _jalviewModelSequence. + */ + private jalview.binding.JalviewModelSequence _jalviewModelSequence; + + + //----------------/ + //- Constructors -/ + //----------------/ + + public JalviewModel() { + super(); + } + + + //-----------/ + //- Methods -/ + //-----------/ + + /** + * Returns the value of field 'creationDate'. + * + * @return the value of field 'CreationDate'. + */ + public java.util.Date getCreationDate( + ) { + return this._creationDate; + } + + /** + * Returns the value of field 'jalviewModelSequence'. + * + * @return the value of field 'JalviewModelSequence'. + */ + public jalview.binding.JalviewModelSequence getJalviewModelSequence( + ) { + return this._jalviewModelSequence; + } + + /** + * Returns the value of field 'vamsasModel'. + * + * @return the value of field 'VamsasModel'. + */ + public jalview.binding.VamsasModel getVamsasModel( + ) { + return this._vamsasModel; + } + + /** + * Returns the value of field 'version'. + * + * @return the value of field 'Version'. + */ + public java.lang.String getVersion( + ) { + return this._version; + } + + /** + * Method isValid. + * + * @return true if this object is valid according to the schema + */ + public boolean isValid( + ) { + try { + validate(); + } catch (org.exolab.castor.xml.ValidationException vex) { + return false; + } + return true; + } + + /** + * + * + * @param out + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void marshal( + final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, out); + } + + /** + * + * + * @param handler + * @throws java.io.IOException if an IOException occurs during + * marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + */ + public void marshal( + final org.xml.sax.ContentHandler handler) + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, handler); + } + + /** + * Sets the value of field 'creationDate'. + * + * @param creationDate the value of field 'creationDate'. + */ + public void setCreationDate( + final java.util.Date creationDate) { + this._creationDate = creationDate; + } + + /** + * Sets the value of field 'jalviewModelSequence'. + * + * @param jalviewModelSequence the value of field + * 'jalviewModelSequence'. + */ + public void setJalviewModelSequence( + final jalview.binding.JalviewModelSequence jalviewModelSequence) { + this._jalviewModelSequence = jalviewModelSequence; + } + + /** + * Sets the value of field 'vamsasModel'. + * + * @param vamsasModel the value of field 'vamsasModel'. + */ + public void setVamsasModel( + final jalview.binding.VamsasModel vamsasModel) { + this._vamsasModel = vamsasModel; + } + + /** + * Sets the value of field 'version'. + * + * @param version the value of field 'version'. + */ + public void setVersion( + final java.lang.String version) { + this._version = version; + } + + /** + * Method unmarshal. + * + * @param reader + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @return the unmarshaled jalview.binding.JalviewModel + */ + public static jalview.binding.JalviewModel unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + return (jalview.binding.JalviewModel) Unmarshaller.unmarshal(jalview.binding.JalviewModel.class, reader); + } + + /** + * + * + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void validate( + ) + throws org.exolab.castor.xml.ValidationException { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); + validator.validate(this); + } + +}