X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJalviewModel.java;h=65f135d6e664879860c758d259bcc1589c8c03e0;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=8edd0124a6640f26d8a953feba1155b263e41781;hpb=ffe9b478a182cab3c8217b5c2bf002c7c1b6d7ec;p=jalview.git

diff --git a/src/jalview/binding/JalviewModel.java b/src/jalview/binding/JalviewModel.java
old mode 100755
new mode 100644
index 8edd012..65f135d
--- a/src/jalview/binding/JalviewModel.java
+++ b/src/jalview/binding/JalviewModel.java
@@ -1,227 +1,246 @@
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.binding;
-
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import java.util.Date;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
-
-/**
- * Class JalviewModel.
- * 
- * @version $Revision$ $Date$
- */
-public class JalviewModel implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _creationDate
-     */
-    private java.util.Date _creationDate;
-
-    /**
-     * Field _version
-     */
-    private java.lang.String _version;
-
-    /**
-     * Field _vamsasModel
-     */
-    private jalview.binding.VamsasModel _vamsasModel;
-
-    /**
-     * Field _jalviewModelSequence
-     */
-    private jalview.binding.JalviewModelSequence _jalviewModelSequence;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public JalviewModel() {
-        super();
-    } //-- jalview.binding.JalviewModel()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Returns the value of field 'creationDate'.
-     * 
-     * @return Date
-     * @return the value of field 'creationDate'.
-     */
-    public java.util.Date getCreationDate()
-    {
-        return this._creationDate;
-    } //-- java.util.Date getCreationDate() 
-
-    /**
-     * Returns the value of field 'jalviewModelSequence'.
-     * 
-     * @return JalviewModelSequence
-     * @return the value of field 'jalviewModelSequence'.
-     */
-    public jalview.binding.JalviewModelSequence getJalviewModelSequence()
-    {
-        return this._jalviewModelSequence;
-    } //-- jalview.binding.JalviewModelSequence getJalviewModelSequence() 
-
-    /**
-     * Returns the value of field 'vamsasModel'.
-     * 
-     * @return VamsasModel
-     * @return the value of field 'vamsasModel'.
-     */
-    public jalview.binding.VamsasModel getVamsasModel()
-    {
-        return this._vamsasModel;
-    } //-- jalview.binding.VamsasModel getVamsasModel() 
-
-    /**
-     * Returns the value of field 'version'.
-     * 
-     * @return String
-     * @return the value of field 'version'.
-     */
-    public java.lang.String getVersion()
-    {
-        return this._version;
-    } //-- java.lang.String getVersion() 
-
-    /**
-     * Method isValid
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean isValid()
-    {
-        try {
-            validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    } //-- boolean isValid() 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param out
-     */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param handler
-     */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
-
-    /**
-     * Sets the value of field 'creationDate'.
-     * 
-     * @param creationDate the value of field 'creationDate'.
-     */
-    public void setCreationDate(java.util.Date creationDate)
-    {
-        this._creationDate = creationDate;
-    } //-- void setCreationDate(java.util.Date) 
-
-    /**
-     * Sets the value of field 'jalviewModelSequence'.
-     * 
-     * @param jalviewModelSequence the value of field
-     * 'jalviewModelSequence'.
-     */
-    public void setJalviewModelSequence(jalview.binding.JalviewModelSequence jalviewModelSequence)
-    {
-        this._jalviewModelSequence = jalviewModelSequence;
-    } //-- void setJalviewModelSequence(jalview.binding.JalviewModelSequence) 
-
-    /**
-     * Sets the value of field 'vamsasModel'.
-     * 
-     * @param vamsasModel the value of field 'vamsasModel'.
-     */
-    public void setVamsasModel(jalview.binding.VamsasModel vamsasModel)
-    {
-        this._vamsasModel = vamsasModel;
-    } //-- void setVamsasModel(jalview.binding.VamsasModel) 
-
-    /**
-     * Sets the value of field 'version'.
-     * 
-     * @param version the value of field 'version'.
-     */
-    public void setVersion(java.lang.String version)
-    {
-        this._version = version;
-    } //-- void setVersion(java.lang.String) 
-
-    /**
-     * Method unmarshal
-     * 
-     * 
-     * 
-     * @param reader
-     * @return Object
-     */
-    public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        return (jalview.binding.JalviewModel) Unmarshaller.unmarshal(jalview.binding.JalviewModel.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
-
-    /**
-     * Method validate
-     * 
-     */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
-    {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    } //-- void validate() 
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.binding;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class JalviewModel.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class JalviewModel implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _creationDate.
+   */
+  private java.util.Date _creationDate;
+
+  /**
+   * Field _version.
+   */
+  private java.lang.String _version;
+
+  /**
+   * Field _vamsasModel.
+   */
+  private jalview.binding.VamsasModel _vamsasModel;
+
+  /**
+   * Field _jalviewModelSequence.
+   */
+  private jalview.binding.JalviewModelSequence _jalviewModelSequence;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public JalviewModel()
+  {
+    super();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * Returns the value of field 'creationDate'.
+   * 
+   * @return the value of field 'CreationDate'.
+   */
+  public java.util.Date getCreationDate()
+  {
+    return this._creationDate;
+  }
+
+  /**
+   * Returns the value of field 'jalviewModelSequence'.
+   * 
+   * @return the value of field 'JalviewModelSequence'.
+   */
+  public jalview.binding.JalviewModelSequence getJalviewModelSequence()
+  {
+    return this._jalviewModelSequence;
+  }
+
+  /**
+   * Returns the value of field 'vamsasModel'.
+   * 
+   * @return the value of field 'VamsasModel'.
+   */
+  public jalview.binding.VamsasModel getVamsasModel()
+  {
+    return this._vamsasModel;
+  }
+
+  /**
+   * Returns the value of field 'version'.
+   * 
+   * @return the value of field 'Version'.
+   */
+  public java.lang.String getVersion()
+  {
+    return this._version;
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid()
+  {
+    try
+    {
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex)
+    {
+      return false;
+    }
+    return true;
+  }
+
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+          throws java.io.IOException,
+          org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
+   * Sets the value of field 'creationDate'.
+   * 
+   * @param creationDate
+   *          the value of field 'creationDate'.
+   */
+  public void setCreationDate(final java.util.Date creationDate)
+  {
+    this._creationDate = creationDate;
+  }
+
+  /**
+   * Sets the value of field 'jalviewModelSequence'.
+   * 
+   * @param jalviewModelSequence
+   *          the value of field 'jalviewModelSequence'.
+   */
+  public void setJalviewModelSequence(
+          final jalview.binding.JalviewModelSequence jalviewModelSequence)
+  {
+    this._jalviewModelSequence = jalviewModelSequence;
+  }
+
+  /**
+   * Sets the value of field 'vamsasModel'.
+   * 
+   * @param vamsasModel
+   *          the value of field 'vamsasModel'.
+   */
+  public void setVamsasModel(final jalview.binding.VamsasModel vamsasModel)
+  {
+    this._vamsasModel = vamsasModel;
+  }
+
+  /**
+   * Sets the value of field 'version'.
+   * 
+   * @param version
+   *          the value of field 'version'.
+   */
+  public void setVersion(final java.lang.String version)
+  {
+    this._version = version;
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled jalview.binding.JalviewModel
+   */
+  public static jalview.binding.JalviewModel unmarshal(
+          final java.io.Reader reader)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.binding.JalviewModel) Unmarshaller.unmarshal(
+            jalview.binding.JalviewModel.class, reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
+
+}