X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJalviewModel.java;h=8edd0124a6640f26d8a953feba1155b263e41781;hb=32ce9ddb7ce1a68add53dd81785ae428ca136a83;hp=85bfe26ac63eeaf431bbb5457ba3b602305b04f8;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git diff --git a/src/jalview/binding/JalviewModel.java b/src/jalview/binding/JalviewModel.java index 85bfe26..8edd012 100755 --- a/src/jalview/binding/JalviewModel.java +++ b/src/jalview/binding/JalviewModel.java @@ -1,55 +1,37 @@ /* - * This class was automatically generated with + * This class was automatically generated with * Castor 0.9.6, using an XML * Schema. * $Id$ */ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package jalview.binding; - -import org.exolab.castor.xml.MarshalException; -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; -import org.xml.sax.ContentHandler; +package jalview.binding; + //---------------------------------/ + //- Imported classes and packages -/ //---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ + import java.io.IOException; import java.io.Reader; import java.io.Serializable; import java.io.Writer; - import java.util.Date; - +import org.exolab.castor.xml.MarshalException; +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; +import org.exolab.castor.xml.ValidationException; +import org.xml.sax.ContentHandler; /** * Class JalviewModel. - * + * * @version $Revision$ $Date$ */ public class JalviewModel implements java.io.Serializable { - //--------------------------/ - //- Class/Member Variables -/ + + + //--------------------------/ + //- Class/Member Variables -/ //--------------------------/ /** @@ -58,6 +40,11 @@ public class JalviewModel implements java.io.Serializable { private java.util.Date _creationDate; /** + * Field _version + */ + private java.lang.String _version; + + /** * Field _vamsasModel */ private jalview.binding.VamsasModel _vamsasModel; @@ -67,143 +54,174 @@ public class JalviewModel implements java.io.Serializable { */ private jalview.binding.JalviewModelSequence _jalviewModelSequence; + + //----------------/ + //- Constructors -/ //----------------/ - //- Constructors -/ - //----------------/ + public JalviewModel() { super(); - } - //-- jalview.binding.JalviewModel() - //-----------/ + } //-- jalview.binding.JalviewModel() + - public java.util.Date getCreationDate() { + //-----------/ + //- Methods -/ + //-----------/ + + /** + * Returns the value of field 'creationDate'. + * + * @return Date + * @return the value of field 'creationDate'. + */ + public java.util.Date getCreationDate() + { return this._creationDate; - } - //-- java.util.Date getCreationDate() + } //-- java.util.Date getCreationDate() /** * Returns the value of field 'jalviewModelSequence'. - * + * * @return JalviewModelSequence * @return the value of field 'jalviewModelSequence'. */ - public jalview.binding.JalviewModelSequence getJalviewModelSequence() { + public jalview.binding.JalviewModelSequence getJalviewModelSequence() + { return this._jalviewModelSequence; - } - //-- jalview.binding.JalviewModelSequence getJalviewModelSequence() + } //-- jalview.binding.JalviewModelSequence getJalviewModelSequence() /** * Returns the value of field 'vamsasModel'. - * + * * @return VamsasModel * @return the value of field 'vamsasModel'. */ - public jalview.binding.VamsasModel getVamsasModel() { + public jalview.binding.VamsasModel getVamsasModel() + { return this._vamsasModel; - } - //-- jalview.binding.VamsasModel getVamsasModel() + } //-- jalview.binding.VamsasModel getVamsasModel() + + /** + * Returns the value of field 'version'. + * + * @return String + * @return the value of field 'version'. + */ + public java.lang.String getVersion() + { + return this._version; + } //-- java.lang.String getVersion() /** * Method isValid - * - * - * + * + * + * * @return boolean */ - public boolean isValid() { + public boolean isValid() + { try { validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { + } + catch (org.exolab.castor.xml.ValidationException vex) { return false; } - return true; - } - //-- boolean isValid() + } //-- boolean isValid() /** * Method marshal - * - * - * + * + * + * * @param out */ public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, out); - } - //-- void marshal(java.io.Writer) + } //-- void marshal(java.io.Writer) /** * Method marshal - * - * - * + * + * + * * @param handler */ public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, handler); - } - //-- void marshal(org.xml.sax.ContentHandler) + } //-- void marshal(org.xml.sax.ContentHandler) /** * Sets the value of field 'creationDate'. - * + * * @param creationDate the value of field 'creationDate'. */ - public void setCreationDate(java.util.Date creationDate) { + public void setCreationDate(java.util.Date creationDate) + { this._creationDate = creationDate; - } - //-- void setCreationDate(java.util.Date) + } //-- void setCreationDate(java.util.Date) /** * Sets the value of field 'jalviewModelSequence'. - * + * * @param jalviewModelSequence the value of field * 'jalviewModelSequence'. */ - public void setJalviewModelSequence( - jalview.binding.JalviewModelSequence jalviewModelSequence) { + public void setJalviewModelSequence(jalview.binding.JalviewModelSequence jalviewModelSequence) + { this._jalviewModelSequence = jalviewModelSequence; - } - //-- void setJalviewModelSequence(jalview.binding.JalviewModelSequence) + } //-- void setJalviewModelSequence(jalview.binding.JalviewModelSequence) /** * Sets the value of field 'vamsasModel'. - * + * * @param vamsasModel the value of field 'vamsasModel'. */ - public void setVamsasModel(jalview.binding.VamsasModel vamsasModel) { + public void setVamsasModel(jalview.binding.VamsasModel vamsasModel) + { this._vamsasModel = vamsasModel; - } - //-- void setVamsasModel(jalview.binding.VamsasModel) + } //-- void setVamsasModel(jalview.binding.VamsasModel) + + /** + * Sets the value of field 'version'. + * + * @param version the value of field 'version'. + */ + public void setVersion(java.lang.String version) + { + this._version = version; + } //-- void setVersion(java.lang.String) /** * Method unmarshal - * - * - * + * + * + * * @param reader * @return Object */ public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { - return (jalview.binding.JalviewModel) Unmarshaller.unmarshal(jalview.binding.JalviewModel.class, - reader); - } - //-- java.lang.Object unmarshal(java.io.Reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + return (jalview.binding.JalviewModel) Unmarshaller.unmarshal(jalview.binding.JalviewModel.class, reader); + } //-- java.lang.Object unmarshal(java.io.Reader) /** * Method validate - * + * */ - public void validate() throws org.exolab.castor.xml.ValidationException { + public void validate() + throws org.exolab.castor.xml.ValidationException + { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } - //-- void validate() + } //-- void validate() + }