X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJalviewModelSequence2.java;fp=src%2Fjalview%2Fbinding%2FJalviewModelSequence2.java;h=36e55793cb661be9105cb31bd7fecc48fb3c40bd;hb=5a35786bf1c4219bfa00603036497a18486c6801;hp=0000000000000000000000000000000000000000;hpb=ed4b153fcf35496ccf42b074bf90d64ab71ed328;p=jalview.git

diff --git a/src/jalview/binding/JalviewModelSequence2.java b/src/jalview/binding/JalviewModelSequence2.java
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+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.binding;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+import java.util.Enumeration;
+import java.util.Vector;
+import org.exolab.castor.xml.MarshalException;
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+import org.exolab.castor.xml.ValidationException;
+import org.xml.sax.ContentHandler;
+
+/**
+ * Class JalviewModelSequence2.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class JalviewModelSequence2 implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _items
+     */
+    private java.util.Vector _items;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public JalviewModelSequence2() {
+        super();
+        _items = new Vector();
+    } //-- jalview.binding.JalviewModelSequence2()
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     * Method addJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @param vJalviewModelSequence2Item
+     */
+    public void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
+        throws java.lang.IndexOutOfBoundsException
+    {
+        _items.addElement(vJalviewModelSequence2Item);
+    } //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
+
+    /**
+     * Method addJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @param index
+     * @param vJalviewModelSequence2Item
+     */
+    public void addJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
+        throws java.lang.IndexOutOfBoundsException
+    {
+        _items.insertElementAt(vJalviewModelSequence2Item, index);
+    } //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
+
+    /**
+     * Method enumerateJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @return Enumeration
+     */
+    public java.util.Enumeration enumerateJalviewModelSequence2Item()
+    {
+        return _items.elements();
+    } //-- java.util.Enumeration enumerateJalviewModelSequence2Item() 
+
+    /**
+     * Method getJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @param index
+     * @return JalviewModelSequence2Item
+     */
+    public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int index)
+        throws java.lang.IndexOutOfBoundsException
+    {
+        //-- check bounds for index
+        if ((index < 0) || (index > _items.size())) {
+            throw new IndexOutOfBoundsException();
+        }
+        
+        return (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
+    } //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int) 
+
+    /**
+     * Method getJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @return JalviewModelSequence2Item
+     */
+    public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()
+    {
+        int size = _items.size();
+        jalview.binding.JalviewModelSequence2Item[] mArray = new jalview.binding.JalviewModelSequence2Item[size];
+        for (int index = 0; index < size; index++) {
+            mArray[index] = (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
+        }
+        return mArray;
+    } //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() 
+
+    /**
+     * Method getJalviewModelSequence2ItemCount
+     * 
+     * 
+     * 
+     * @return int
+     */
+    public int getJalviewModelSequence2ItemCount()
+    {
+        return _items.size();
+    } //-- int getJalviewModelSequence2ItemCount() 
+
+    /**
+     * Method isValid
+     * 
+     * 
+     * 
+     * @return boolean
+     */
+    public boolean isValid()
+    {
+        try {
+            validate();
+        }
+        catch (org.exolab.castor.xml.ValidationException vex) {
+            return false;
+        }
+        return true;
+    } //-- boolean isValid() 
+
+    /**
+     * Method marshal
+     * 
+     * 
+     * 
+     * @param out
+     */
+    public void marshal(java.io.Writer out)
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+    {
+        
+        Marshaller.marshal(this, out);
+    } //-- void marshal(java.io.Writer) 
+
+    /**
+     * Method marshal
+     * 
+     * 
+     * 
+     * @param handler
+     */
+    public void marshal(org.xml.sax.ContentHandler handler)
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+    {
+        
+        Marshaller.marshal(this, handler);
+    } //-- void marshal(org.xml.sax.ContentHandler) 
+
+    /**
+     * Method removeAllJalviewModelSequence2Item
+     * 
+     */
+    public void removeAllJalviewModelSequence2Item()
+    {
+        _items.removeAllElements();
+    } //-- void removeAllJalviewModelSequence2Item() 
+
+    /**
+     * Method removeJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @param index
+     * @return JalviewModelSequence2Item
+     */
+    public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int index)
+    {
+        java.lang.Object obj = _items.elementAt(index);
+        _items.removeElementAt(index);
+        return (jalview.binding.JalviewModelSequence2Item) obj;
+    } //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int) 
+
+    /**
+     * Method setJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @param index
+     * @param vJalviewModelSequence2Item
+     */
+    public void setJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
+        throws java.lang.IndexOutOfBoundsException
+    {
+        //-- check bounds for index
+        if ((index < 0) || (index > _items.size())) {
+            throw new IndexOutOfBoundsException();
+        }
+        _items.setElementAt(vJalviewModelSequence2Item, index);
+    } //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
+
+    /**
+     * Method setJalviewModelSequence2Item
+     * 
+     * 
+     * 
+     * @param jalviewModelSequence2ItemArray
+     */
+    public void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray)
+    {
+        //-- copy array
+        _items.removeAllElements();
+        for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++) {
+            _items.addElement(jalviewModelSequence2ItemArray[i]);
+        }
+    } //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
+
+    /**
+     * Method unmarshal
+     * 
+     * 
+     * 
+     * @param reader
+     * @return Object
+     */
+    public static java.lang.Object unmarshal(java.io.Reader reader)
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+    {
+        return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class, reader);
+    } //-- java.lang.Object unmarshal(java.io.Reader) 
+
+    /**
+     * Method validate
+     * 
+     */
+    public void validate()
+        throws org.exolab.castor.xml.ValidationException
+    {
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+        validator.validate(this);
+    } //-- void validate() 
+
+}