X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJalviewModelSequence2.java;h=2cfd72c92868543ef729be4ec8357377095f1014;hb=e3cad17c5dba620dafc8459295ecc959cbe52938;hp=36e55793cb661be9105cb31bd7fecc48fb3c40bd;hpb=c68ce4c63bd79f23b87aac3eb0afa7f6b42a3098;p=jalview.git

diff --git a/src/jalview/binding/JalviewModelSequence2.java b/src/jalview/binding/JalviewModelSequence2.java
index 36e5579..2cfd72c 100755
--- a/src/jalview/binding/JalviewModelSequence2.java
+++ b/src/jalview/binding/JalviewModelSequence2.java
@@ -1,38 +1,39 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
  */
-
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
+import org.exolab.castor.xml.MarshalException;
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+import org.exolab.castor.xml.ValidationException;
 
+import org.xml.sax.ContentHandler;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
 import java.io.IOException;
 import java.io.Reader;
 import java.io.Serializable;
 import java.io.Writer;
+
 import java.util.Enumeration;
 import java.util.Vector;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
+
 
 /**
  * Class JalviewModelSequence2.
- * 
+ *
  * @version $Revision$ $Date$
  */
-public class JalviewModelSequence2 implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
+public class JalviewModelSequence2 implements java.io.Serializable
+{
+    //--------------------------/
+    //- Class/Member Variables -/
     //--------------------------/
 
     /**
@@ -40,235 +41,279 @@ public class JalviewModelSequence2 implements java.io.Serializable {
      */
     private java.util.Vector _items;
 
-
-      //----------------/
-     //- Constructors -/
     //----------------/
-
-    public JalviewModelSequence2() {
+    //- Constructors -/
+    //----------------/
+    public JalviewModelSequence2()
+    {
         super();
         _items = new Vector();
-    } //-- jalview.binding.JalviewModelSequence2()
-
+    }
 
-      //-----------/
-     //- Methods -/
+    //-- jalview.binding.JalviewModelSequence2()
     //-----------/
 
     /**
-     * Method addJalviewModelSequence2Item
-     * 
-     * 
-     * 
-     * @param vJalviewModelSequence2Item
+     * DOCUMENT ME!
+     *
+     * @param vJalviewModelSequence2Item DOCUMENT ME!
+     *
+     * @throws java.lang.IndexOutOfBoundsException DOCUMENT ME!
      */
-    public void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
+    public void addJalviewModelSequence2Item(
+        jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
         throws java.lang.IndexOutOfBoundsException
     {
         _items.addElement(vJalviewModelSequence2Item);
-    } //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
+    }
+
+    //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
 
     /**
      * Method addJalviewModelSequence2Item
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @param vJalviewModelSequence2Item
      */
-    public void addJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
+    public void addJalviewModelSequence2Item(int index,
+        jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
         throws java.lang.IndexOutOfBoundsException
     {
         _items.insertElementAt(vJalviewModelSequence2Item, index);
-    } //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
+    }
+
+    //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
 
     /**
      * Method enumerateJalviewModelSequence2Item
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return Enumeration
      */
     public java.util.Enumeration enumerateJalviewModelSequence2Item()
     {
         return _items.elements();
-    } //-- java.util.Enumeration enumerateJalviewModelSequence2Item() 
+    }
+
+    //-- java.util.Enumeration enumerateJalviewModelSequence2Item() 
 
     /**
      * Method getJalviewModelSequence2Item
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @return JalviewModelSequence2Item
      */
-    public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int index)
-        throws java.lang.IndexOutOfBoundsException
+    public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(
+        int index) throws java.lang.IndexOutOfBoundsException
     {
         //-- check bounds for index
-        if ((index < 0) || (index > _items.size())) {
+        if ((index < 0) || (index > _items.size()))
+        {
             throw new IndexOutOfBoundsException();
         }
-        
+
         return (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
-    } //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int) 
+    }
+
+    //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int) 
 
     /**
      * Method getJalviewModelSequence2Item
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return JalviewModelSequence2Item
      */
     public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()
     {
         int size = _items.size();
         jalview.binding.JalviewModelSequence2Item[] mArray = new jalview.binding.JalviewModelSequence2Item[size];
-        for (int index = 0; index < size; index++) {
+
+        for (int index = 0; index < size; index++)
+        {
             mArray[index] = (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
         }
+
         return mArray;
-    } //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() 
+    }
+
+    //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() 
 
     /**
      * Method getJalviewModelSequence2ItemCount
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return int
      */
     public int getJalviewModelSequence2ItemCount()
     {
         return _items.size();
-    } //-- int getJalviewModelSequence2ItemCount() 
+    }
+
+    //-- int getJalviewModelSequence2ItemCount() 
 
     /**
      * Method isValid
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
     public boolean isValid()
     {
-        try {
+        try
+        {
             validate();
         }
-        catch (org.exolab.castor.xml.ValidationException vex) {
+        catch (org.exolab.castor.xml.ValidationException vex)
+        {
             return false;
         }
+
         return true;
-    } //-- boolean isValid() 
+    }
+
+    //-- boolean isValid() 
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param out
      */
     public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        
         Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
+    }
+
+    //-- void marshal(java.io.Writer) 
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param handler
      */
     public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        
         Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
+    }
+
+    //-- void marshal(org.xml.sax.ContentHandler) 
 
     /**
      * Method removeAllJalviewModelSequence2Item
-     * 
+     *
      */
     public void removeAllJalviewModelSequence2Item()
     {
         _items.removeAllElements();
-    } //-- void removeAllJalviewModelSequence2Item() 
+    }
+
+    //-- void removeAllJalviewModelSequence2Item() 
 
     /**
      * Method removeJalviewModelSequence2Item
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @return JalviewModelSequence2Item
      */
-    public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int index)
+    public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(
+        int index)
     {
         java.lang.Object obj = _items.elementAt(index);
         _items.removeElementAt(index);
+
         return (jalview.binding.JalviewModelSequence2Item) obj;
-    } //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int) 
+    }
+
+    //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int) 
 
     /**
      * Method setJalviewModelSequence2Item
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @param vJalviewModelSequence2Item
      */
-    public void setJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
+    public void setJalviewModelSequence2Item(int index,
+        jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
         throws java.lang.IndexOutOfBoundsException
     {
         //-- check bounds for index
-        if ((index < 0) || (index > _items.size())) {
+        if ((index < 0) || (index > _items.size()))
+        {
             throw new IndexOutOfBoundsException();
         }
+
         _items.setElementAt(vJalviewModelSequence2Item, index);
-    } //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
+    }
+
+    //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
 
     /**
      * Method setJalviewModelSequence2Item
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param jalviewModelSequence2ItemArray
      */
-    public void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray)
+    public void setJalviewModelSequence2Item(
+        jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray)
     {
         //-- copy array
         _items.removeAllElements();
-        for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++) {
+
+        for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++)
+        {
             _items.addElement(jalviewModelSequence2ItemArray[i]);
         }
-    } //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
+    }
+
+    //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
 
     /**
      * Method unmarshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param reader
      * @return Object
      */
     public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException
     {
-        return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
+        return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class,
+            reader);
+    }
+
+    //-- java.lang.Object unmarshal(java.io.Reader) 
 
     /**
      * Method validate
-     * 
+     *
      */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
+    public void validate() throws org.exolab.castor.xml.ValidationException
     {
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
         validator.validate(this);
-    } //-- void validate() 
+    }
 
+    //-- void validate() 
 }