X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJalviewModelSequence2Item.java;h=6e54565ca72f2d1105ef7bc15690abe7d960190f;hb=effd8d76f34bc7fd4e069603d80565b7ea9d3ff0;hp=dcd3ebc507059ee568eb4067f5f9290474dc7f91;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git

diff --git a/src/jalview/binding/JalviewModelSequence2Item.java b/src/jalview/binding/JalviewModelSequence2Item.java
index dcd3ebc..6e54565 100755
--- a/src/jalview/binding/JalviewModelSequence2Item.java
+++ b/src/jalview/binding/JalviewModelSequence2Item.java
@@ -5,212 +5,202 @@
  * $Id$
  */
 
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
 //---------------------------------/
 
-import java.io.Serializable;
-import java.util.Enumeration;
-import java.util.Vector;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
+import java.util.*;
 
 /**
  * Class JalviewModelSequence2Item.
  *
  * @version $Revision$ $Date$
  */
-public class JalviewModelSequence2Item implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _userColourSchemeList
-     */
-    private java.util.Vector _userColourSchemeList;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public JalviewModelSequence2Item() {
-        super();
-        _userColourSchemeList = new Vector();
-    } //-- jalview.binding.JalviewModelSequence2Item()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Method addUserColourScheme
-     *
-     *
-     *
-     * @param vUserColourScheme
-     */
-    public void addUserColourScheme(jalview.binding.UserColourScheme vUserColourScheme)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        _userColourSchemeList.addElement(vUserColourScheme);
-    } //-- void addUserColourScheme(jalview.binding.UserColourScheme)
-
-    /**
-     * Method addUserColourScheme
-     *
-     *
-     *
-     * @param index
-     * @param vUserColourScheme
-     */
-    public void addUserColourScheme(int index, jalview.binding.UserColourScheme vUserColourScheme)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        _userColourSchemeList.insertElementAt(vUserColourScheme, index);
-    } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)
-
-    /**
-     * Method enumerateUserColourScheme
-     *
-     *
-     *
-     * @return Enumeration
-     */
-    public java.util.Enumeration enumerateUserColourScheme()
-    {
-        return _userColourSchemeList.elements();
-    } //-- java.util.Enumeration enumerateUserColourScheme()
-
-    /**
-     * Method getUserColourScheme
-     *
-     *
-     *
-     * @param index
-     * @return UserColourScheme
-     */
-    public jalview.binding.UserColourScheme getUserColourScheme(int index)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        //-- check bounds for index
-        if ((index < 0) || (index > _userColourSchemeList.size())) {
-            throw new IndexOutOfBoundsException();
-        }
-
-        return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);
-    } //-- jalview.binding.UserColourScheme getUserColourScheme(int)
-
-    /**
-     * Method getUserColourScheme
-     *
-     *
-     *
-     * @return UserColourScheme
-     */
-    public jalview.binding.UserColourScheme[] getUserColourScheme()
-    {
-        int size = _userColourSchemeList.size();
-        jalview.binding.UserColourScheme[] mArray = new jalview.binding.UserColourScheme[size];
-        for (int index = 0; index < size; index++) {
-            mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);
-        }
-        return mArray;
-    } //-- jalview.binding.UserColourScheme[] getUserColourScheme()
-
-    /**
-     * Method getUserColourSchemeCount
-     *
-     *
-     *
-     * @return int
-     */
-    public int getUserColourSchemeCount()
-    {
-        return _userColourSchemeList.size();
-    } //-- int getUserColourSchemeCount()
-
-    /**
-     * Method removeAllUserColourScheme
-     *
-     */
-    public void removeAllUserColourScheme()
+public class JalviewModelSequence2Item
+    implements java.io.Serializable
+{
+
+  //--------------------------/
+  //- Class/Member Variables -/
+  //--------------------------/
+
+  /**
+   * Field _userColourSchemeList
+   */
+  private java.util.Vector _userColourSchemeList;
+
+  //----------------/
+  //- Constructors -/
+  //----------------/
+
+  public JalviewModelSequence2Item()
+  {
+    super();
+    _userColourSchemeList = new Vector();
+  } //-- jalview.binding.JalviewModelSequence2Item()
+
+  //-----------/
+  //- Methods -/
+  //-----------/
+
+  /**
+   * Method addUserColourScheme
+   *
+   *
+   *
+   * @param vUserColourScheme
+   */
+  public void addUserColourScheme(jalview.binding.UserColourScheme
+                                  vUserColourScheme)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    _userColourSchemeList.addElement(vUserColourScheme);
+  } //-- void addUserColourScheme(jalview.binding.UserColourScheme)
+
+  /**
+   * Method addUserColourScheme
+   *
+   *
+   *
+   * @param index
+   * @param vUserColourScheme
+   */
+  public void addUserColourScheme(int index,
+                                  jalview.binding.UserColourScheme
+                                  vUserColourScheme)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    _userColourSchemeList.insertElementAt(vUserColourScheme, index);
+  } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)
+
+  /**
+   * Method enumerateUserColourScheme
+   *
+   *
+   *
+   * @return Enumeration
+   */
+  public java.util.Enumeration enumerateUserColourScheme()
+  {
+    return _userColourSchemeList.elements();
+  } //-- java.util.Enumeration enumerateUserColourScheme()
+
+  /**
+   * Method getUserColourScheme
+   *
+   *
+   *
+   * @param index
+   * @return UserColourScheme
+   */
+  public jalview.binding.UserColourScheme getUserColourScheme(int index)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    //-- check bounds for index
+    if ( (index < 0) || (index > _userColourSchemeList.size()))
     {
-        _userColourSchemeList.removeAllElements();
-    } //-- void removeAllUserColourScheme()
-
-    /**
-     * Method removeUserColourScheme
-     *
-     *
-     *
-     * @param index
-     * @return UserColourScheme
-     */
-    public jalview.binding.UserColourScheme removeUserColourScheme(int index)
+      throw new IndexOutOfBoundsException();
+    }
+
+    return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(
+        index);
+  } //-- jalview.binding.UserColourScheme getUserColourScheme(int)
+
+  /**
+   * Method getUserColourScheme
+   *
+   *
+   *
+   * @return UserColourScheme
+   */
+  public jalview.binding.UserColourScheme[] getUserColourScheme()
+  {
+    int size = _userColourSchemeList.size();
+    jalview.binding.UserColourScheme[] mArray = new jalview.binding.
+        UserColourScheme[size];
+    for (int index = 0; index < size; index++)
     {
-        java.lang.Object obj = _userColourSchemeList.elementAt(index);
-        _userColourSchemeList.removeElementAt(index);
-        return (jalview.binding.UserColourScheme) obj;
-    } //-- jalview.binding.UserColourScheme removeUserColourScheme(int)
-
-    /**
-     * Method setUserColourScheme
-     *
-     *
-     *
-     * @param index
-     * @param vUserColourScheme
-     */
-    public void setUserColourScheme(int index, jalview.binding.UserColourScheme vUserColourScheme)
-        throws java.lang.IndexOutOfBoundsException
+      mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.
+          elementAt(index);
+    }
+    return mArray;
+  } //-- jalview.binding.UserColourScheme[] getUserColourScheme()
+
+  /**
+   * Method getUserColourSchemeCount
+   *
+   *
+   *
+   * @return int
+   */
+  public int getUserColourSchemeCount()
+  {
+    return _userColourSchemeList.size();
+  } //-- int getUserColourSchemeCount()
+
+  /**
+   * Method removeAllUserColourScheme
+   *
+   */
+  public void removeAllUserColourScheme()
+  {
+    _userColourSchemeList.removeAllElements();
+  } //-- void removeAllUserColourScheme()
+
+  /**
+   * Method removeUserColourScheme
+   *
+   *
+   *
+   * @param index
+   * @return UserColourScheme
+   */
+  public jalview.binding.UserColourScheme removeUserColourScheme(int index)
+  {
+    java.lang.Object obj = _userColourSchemeList.elementAt(index);
+    _userColourSchemeList.removeElementAt(index);
+    return (jalview.binding.UserColourScheme) obj;
+  } //-- jalview.binding.UserColourScheme removeUserColourScheme(int)
+
+  /**
+   * Method setUserColourScheme
+   *
+   *
+   *
+   * @param index
+   * @param vUserColourScheme
+   */
+  public void setUserColourScheme(int index,
+                                  jalview.binding.UserColourScheme
+                                  vUserColourScheme)
+      throws java.lang.IndexOutOfBoundsException
+  {
+    //-- check bounds for index
+    if ( (index < 0) || (index > _userColourSchemeList.size()))
     {
-        //-- check bounds for index
-        if ((index < 0) || (index > _userColourSchemeList.size())) {
-            throw new IndexOutOfBoundsException();
-        }
-        _userColourSchemeList.setElementAt(vUserColourScheme, index);
-    } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)
-
-    /**
-     * Method setUserColourScheme
-     *
-     *
-     *
-     * @param userColourSchemeArray
-     */
-    public void setUserColourScheme(jalview.binding.UserColourScheme[] userColourSchemeArray)
+      throw new IndexOutOfBoundsException();
+    }
+    _userColourSchemeList.setElementAt(vUserColourScheme, index);
+  } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)
+
+  /**
+   * Method setUserColourScheme
+   *
+   *
+   *
+   * @param userColourSchemeArray
+   */
+  public void setUserColourScheme(jalview.binding.UserColourScheme[]
+                                  userColourSchemeArray)
+  {
+    //-- copy array
+    _userColourSchemeList.removeAllElements();
+    for (int i = 0; i < userColourSchemeArray.length; i++)
     {
-        //-- copy array
-        _userColourSchemeList.removeAllElements();
-        for (int i = 0; i < userColourSchemeArray.length; i++) {
-            _userColourSchemeList.addElement(userColourSchemeArray[i]);
-        }
-    } //-- void setUserColourScheme(jalview.binding.UserColourScheme)
+      _userColourSchemeList.addElement(userColourSchemeArray[i]);
+    }
+  } //-- void setUserColourScheme(jalview.binding.UserColourScheme)
 
 }