X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FJalviewModelSequence2Item.java;h=79987940aca5a40ae5e519198586a8dfff8c6d52;hb=1d6ae39a6442c455d362b933f1da89b0a481e5f5;hp=8678b099775f03ae3c25a6a1766d6817193b0735;hpb=5a35786bf1c4219bfa00603036497a18486c6801;p=jalview.git

diff --git a/src/jalview/binding/JalviewModelSequence2Item.java b/src/jalview/binding/JalviewModelSequence2Item.java
index 8678b09..7998794 100755
--- a/src/jalview/binding/JalviewModelSequence2Item.java
+++ b/src/jalview/binding/JalviewModelSequence2Item.java
@@ -1,32 +1,49 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
  */
-
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+*/
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
 
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
 import java.io.Serializable;
+
 import java.util.Enumeration;
 import java.util.Vector;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
+
 
 /**
  * Class JalviewModelSequence2Item.
- * 
+ *
  * @version $Revision$ $Date$
  */
 public class JalviewModelSequence2Item implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
+    //--------------------------/
+    //- Class/Member Variables -/
     //--------------------------/
 
     /**
@@ -34,164 +51,160 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
      */
     private java.util.Vector _userColourSchemeList;
 
-
-      //----------------/
-     //- Constructors -/
     //----------------/
-
+    //- Constructors -/
+    //----------------/
     public JalviewModelSequence2Item() {
         super();
         _userColourSchemeList = new Vector();
-    } //-- jalview.binding.JalviewModelSequence2Item()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
+    }
+     //-- jalview.binding.JalviewModelSequence2Item()
+ //-----------/
 
-    /**
-     * Method addUserColourScheme
-     * 
-     * 
-     * 
-     * @param vUserColourScheme
-     */
-    public void addUserColourScheme(jalview.binding.UserColourScheme vUserColourScheme)
-        throws java.lang.IndexOutOfBoundsException
-    {
+    public void addUserColourScheme(
+        jalview.binding.UserColourScheme vUserColourScheme)
+        throws java.lang.IndexOutOfBoundsException {
         _userColourSchemeList.addElement(vUserColourScheme);
-    } //-- void addUserColourScheme(jalview.binding.UserColourScheme) 
+    }
+     //-- void addUserColourScheme(jalview.binding.UserColourScheme)
 
     /**
      * Method addUserColourScheme
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @param vUserColourScheme
      */
-    public void addUserColourScheme(int index, jalview.binding.UserColourScheme vUserColourScheme)
-        throws java.lang.IndexOutOfBoundsException
-    {
+    public void addUserColourScheme(int index,
+        jalview.binding.UserColourScheme vUserColourScheme)
+        throws java.lang.IndexOutOfBoundsException {
         _userColourSchemeList.insertElementAt(vUserColourScheme, index);
-    } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme) 
+    }
+     //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)
 
     /**
      * Method enumerateUserColourScheme
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return Enumeration
      */
-    public java.util.Enumeration enumerateUserColourScheme()
-    {
+    public java.util.Enumeration enumerateUserColourScheme() {
         return _userColourSchemeList.elements();
-    } //-- java.util.Enumeration enumerateUserColourScheme() 
+    }
+     //-- java.util.Enumeration enumerateUserColourScheme()
 
     /**
      * Method getUserColourScheme
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @return UserColourScheme
      */
     public jalview.binding.UserColourScheme getUserColourScheme(int index)
-        throws java.lang.IndexOutOfBoundsException
-    {
+        throws java.lang.IndexOutOfBoundsException {
         //-- check bounds for index
         if ((index < 0) || (index > _userColourSchemeList.size())) {
             throw new IndexOutOfBoundsException();
         }
-        
+
         return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);
-    } //-- jalview.binding.UserColourScheme getUserColourScheme(int) 
+    }
+     //-- jalview.binding.UserColourScheme getUserColourScheme(int)
 
     /**
      * Method getUserColourScheme
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return UserColourScheme
      */
-    public jalview.binding.UserColourScheme[] getUserColourScheme()
-    {
+    public jalview.binding.UserColourScheme[] getUserColourScheme() {
         int size = _userColourSchemeList.size();
         jalview.binding.UserColourScheme[] mArray = new jalview.binding.UserColourScheme[size];
+
         for (int index = 0; index < size; index++) {
             mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);
         }
+
         return mArray;
-    } //-- jalview.binding.UserColourScheme[] getUserColourScheme() 
+    }
+     //-- jalview.binding.UserColourScheme[] getUserColourScheme()
 
     /**
      * Method getUserColourSchemeCount
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return int
      */
-    public int getUserColourSchemeCount()
-    {
+    public int getUserColourSchemeCount() {
         return _userColourSchemeList.size();
-    } //-- int getUserColourSchemeCount() 
+    }
+     //-- int getUserColourSchemeCount()
 
     /**
      * Method removeAllUserColourScheme
-     * 
+     *
      */
-    public void removeAllUserColourScheme()
-    {
+    public void removeAllUserColourScheme() {
         _userColourSchemeList.removeAllElements();
-    } //-- void removeAllUserColourScheme() 
+    }
+     //-- void removeAllUserColourScheme()
 
     /**
      * Method removeUserColourScheme
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @return UserColourScheme
      */
-    public jalview.binding.UserColourScheme removeUserColourScheme(int index)
-    {
+    public jalview.binding.UserColourScheme removeUserColourScheme(int index) {
         java.lang.Object obj = _userColourSchemeList.elementAt(index);
         _userColourSchemeList.removeElementAt(index);
+
         return (jalview.binding.UserColourScheme) obj;
-    } //-- jalview.binding.UserColourScheme removeUserColourScheme(int) 
+    }
+     //-- jalview.binding.UserColourScheme removeUserColourScheme(int)
 
     /**
      * Method setUserColourScheme
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param index
      * @param vUserColourScheme
      */
-    public void setUserColourScheme(int index, jalview.binding.UserColourScheme vUserColourScheme)
-        throws java.lang.IndexOutOfBoundsException
-    {
+    public void setUserColourScheme(int index,
+        jalview.binding.UserColourScheme vUserColourScheme)
+        throws java.lang.IndexOutOfBoundsException {
         //-- check bounds for index
         if ((index < 0) || (index > _userColourSchemeList.size())) {
             throw new IndexOutOfBoundsException();
         }
+
         _userColourSchemeList.setElementAt(vUserColourScheme, index);
-    } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme) 
+    }
+     //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)
 
     /**
      * Method setUserColourScheme
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param userColourSchemeArray
      */
-    public void setUserColourScheme(jalview.binding.UserColourScheme[] userColourSchemeArray)
-    {
+    public void setUserColourScheme(
+        jalview.binding.UserColourScheme[] userColourSchemeArray) {
         //-- copy array
         _userColourSchemeList.removeAllElements();
+
         for (int i = 0; i < userColourSchemeArray.length; i++) {
             _userColourSchemeList.addElement(userColourSchemeArray[i]);
         }
-    } //-- void setUserColourScheme(jalview.binding.UserColourScheme) 
-
+    }
+     //-- void setUserColourScheme(jalview.binding.UserColourScheme)
 }