X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FResidue.java;h=ff0cb63152ca4f09c6caf8f9fcab83ec68f6802d;hb=1d6ae39a6442c455d362b933f1da89b0a481e5f5;hp=69e4312ecfb68d509d203707352e4036f97fe29e;hpb=5a35786bf1c4219bfa00603036497a18486c6801;p=jalview.git

diff --git a/src/jalview/binding/Residue.java b/src/jalview/binding/Residue.java
index 69e4312..ff0cb63 100755
--- a/src/jalview/binding/Residue.java
+++ b/src/jalview/binding/Residue.java
@@ -1,36 +1,53 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
  */
-
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+*/
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
 import org.exolab.castor.xml.MarshalException;
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 import org.exolab.castor.xml.ValidationException;
+
 import org.xml.sax.ContentHandler;
 
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+
+
 /**
  * Class Residue.
- * 
+ *
  * @version $Revision$ $Date$
  */
 public class Residue implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
+    //--------------------------/
+    //- Class/Member Variables -/
     //--------------------------/
 
     /**
@@ -48,153 +65,144 @@ public class Residue implements java.io.Serializable {
      */
     private boolean _has_RGB;
 
-
-      //----------------/
-     //- Constructors -/
     //----------------/
-
+    //- Constructors -/
+    //----------------/
     public Residue() {
         super();
-    } //-- jalview.binding.Residue()
+    }
+     //-- jalview.binding.Residue()
+ //-----------/
 
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Method deleteRGB
-     * 
-     */
-    public void deleteRGB()
-    {
-        this._has_RGB= false;
-    } //-- void deleteRGB() 
+    public void deleteRGB() {
+        this._has_RGB = false;
+    }
+     //-- void deleteRGB()
 
     /**
      * Returns the value of field 'name'.
-     * 
+     *
      * @return String
      * @return the value of field 'name'.
      */
-    public java.lang.String getName()
-    {
+    public java.lang.String getName() {
         return this._name;
-    } //-- java.lang.String getName() 
+    }
+     //-- java.lang.String getName()
 
     /**
      * Returns the value of field 'RGB'.
-     * 
+     *
      * @return int
      * @return the value of field 'RGB'.
      */
-    public int getRGB()
-    {
+    public int getRGB() {
         return this._RGB;
-    } //-- int getRGB() 
+    }
+     //-- int getRGB()
 
     /**
      * Method hasRGB
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
-    public boolean hasRGB()
-    {
+    public boolean hasRGB() {
         return this._has_RGB;
-    } //-- boolean hasRGB() 
+    }
+     //-- boolean hasRGB()
 
     /**
      * Method isValid
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @return boolean
      */
-    public boolean isValid()
-    {
+    public boolean isValid() {
         try {
             validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
+        } catch (org.exolab.castor.xml.ValidationException vex) {
             return false;
         }
+
         return true;
-    } //-- boolean isValid() 
+    }
+     //-- boolean isValid()
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param out
      */
     public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException {
         Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
+    }
+     //-- void marshal(java.io.Writer)
 
     /**
      * Method marshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param handler
      */
     public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException {
         Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
+    }
+     //-- void marshal(org.xml.sax.ContentHandler)
 
     /**
      * Sets the value of field 'name'.
-     * 
+     *
      * @param name the value of field 'name'.
      */
-    public void setName(java.lang.String name)
-    {
+    public void setName(java.lang.String name) {
         this._name = name;
-    } //-- void setName(java.lang.String) 
+    }
+     //-- void setName(java.lang.String)
 
     /**
      * Sets the value of field 'RGB'.
-     * 
+     *
      * @param RGB the value of field 'RGB'.
      */
-    public void setRGB(int RGB)
-    {
+    public void setRGB(int RGB) {
         this._RGB = RGB;
         this._has_RGB = true;
-    } //-- void setRGB(int) 
+    }
+     //-- void setRGB(int)
 
     /**
      * Method unmarshal
-     * 
-     * 
-     * 
+     *
+     *
+     *
      * @param reader
      * @return Object
      */
     public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        return (jalview.binding.Residue) Unmarshaller.unmarshal(jalview.binding.Residue.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException {
+        return (jalview.binding.Residue) Unmarshaller.unmarshal(jalview.binding.Residue.class,
+            reader);
+    }
+     //-- java.lang.Object unmarshal(java.io.Reader)
 
     /**
      * Method validate
-     * 
+     *
      */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
-    {
+    public void validate() throws org.exolab.castor.xml.ValidationException {
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
         validator.validate(this);
-    } //-- void validate() 
-
+    }
+     //-- void validate()
 }