X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FSequence.java;h=628e209edb34ee8364180640cb6a037379447479;hb=588042b69abf8e60bcc950b24c283933c7dd422f;hp=290354ef7363e976c480b80dcda6729e9c75cbb1;hpb=5cd8e373c75fb348ecda4d94d8a46468fb92756d;p=jalview.git

diff --git a/src/jalview/binding/Sequence.java b/src/jalview/binding/Sequence.java
index 290354e..628e209 100755
--- a/src/jalview/binding/Sequence.java
+++ b/src/jalview/binding/Sequence.java
@@ -4,7 +4,6 @@
  * Schema.
  * $Id$
  */
-
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
@@ -23,63 +22,49 @@
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
 */
-
 package jalview.binding;
 
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
 import org.exolab.castor.xml.MarshalException;
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 import org.exolab.castor.xml.ValidationException;
+
 import org.xml.sax.ContentHandler;
 
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+
+
 /**
  * Class Sequence.
  *
  * @version $Revision$ $Date$
  */
-public class Sequence extends SequenceType
-implements java.io.Serializable
-{
-
-
-      //----------------/
-     //- Constructors -/
+public class Sequence extends SequenceType implements java.io.Serializable {
+    //----------------/
+    //- Constructors -/
     //----------------/
-
     public Sequence() {
         super();
-    } //-- jalview.binding.Sequence()
+    }
+     //-- jalview.binding.Sequence()
+ //-----------/
 
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Method isValid
-     *
-     *
-     *
-     * @return boolean
-     */
-    public boolean isValid()
-    {
+    public boolean isValid() {
         try {
             validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
+        } catch (org.exolab.castor.xml.ValidationException vex) {
             return false;
         }
+
         return true;
-    } //-- boolean isValid()
+    }
+     //-- boolean isValid()
 
     /**
      * Method marshal
@@ -89,11 +74,11 @@ implements java.io.Serializable
      * @param out
      */
     public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException {
         Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer)
+    }
+     //-- void marshal(java.io.Writer)
 
     /**
      * Method marshal
@@ -103,11 +88,11 @@ implements java.io.Serializable
      * @param handler
      */
     public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException {
         Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler)
+    }
+     //-- void marshal(org.xml.sax.ContentHandler)
 
     /**
      * Method unmarshal
@@ -118,20 +103,20 @@ implements java.io.Serializable
      * @return Object
      */
     public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        return (jalview.binding.Sequence) Unmarshaller.unmarshal(jalview.binding.Sequence.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader)
+        throws org.exolab.castor.xml.MarshalException, 
+            org.exolab.castor.xml.ValidationException {
+        return (jalview.binding.Sequence) Unmarshaller.unmarshal(jalview.binding.Sequence.class,
+            reader);
+    }
+     //-- java.lang.Object unmarshal(java.io.Reader)
 
     /**
      * Method validate
      *
      */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
-    {
+    public void validate() throws org.exolab.castor.xml.ValidationException {
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
         validator.validate(this);
-    } //-- void validate()
-
+    }
+     //-- void validate()
 }