X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FSequenceSet.java;h=05da739d85593741e5a61f298d69b5565faf3354;hb=de75573aa38c4b40686256d4332c3a069b6a98ca;hp=611d49dbd918c3afaf245f04ab41aa2cc03648b7;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git
diff --git a/src/jalview/binding/SequenceSet.java b/src/jalview/binding/SequenceSet.java
index 611d49d..05da739 100644
--- a/src/jalview/binding/SequenceSet.java
+++ b/src/jalview/binding/SequenceSet.java
@@ -1,19 +1,21 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.binding;
@@ -22,6 +24,8 @@ package jalview.binding;
//- Imported classes and packages -/
//---------------------------------/
+import jalview.util.MessageManager;
+
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
@@ -184,9 +188,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException("getAnnotation: Index value '"
- + index + "' not in range [0.."
- + (this._annotationList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "getAnnotation",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._annotationList.size() - 1)).toString()
+ }));
}
return (jalview.binding.Annotation) _annotationList.get(index);
@@ -242,9 +248,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException("getSequence: Index value '"
- + index + "' not in range [0.."
- + (this._sequenceList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "getSequence",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._sequenceList.size() - 1)).toString()
+ }));
}
return (jalview.binding.Sequence) _sequenceList.get(index);
@@ -439,9 +447,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException("setAnnotation: Index value '"
- + index + "' not in range [0.."
- + (this._annotationList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "setAnnotation",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._annotationList.size() - 1)).toString()
+ }));
}
this._annotationList.set(index, vAnnotation);
@@ -490,9 +500,11 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException("setSequence: Index value '"
- + index + "' not in range [0.."
- + (this._sequenceList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+ "setSequence",
+ Integer.valueOf(index).toString(),
+ Integer.valueOf((this._sequenceList.size() - 1)).toString()
+ }));
}
this._sequenceList.set(index, vSequence);