X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FSequenceSet.java;h=59151c830c4aed85440c07747c66f6cae4f4fe3a;hb=3ee0ddbd50e6a0fb9f04c00bf845288a5a137f2f;hp=fa6feda62598c7fc464f4d4649b8ba1f25caf41e;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/binding/SequenceSet.java b/src/jalview/binding/SequenceSet.java
old mode 100755
new mode 100644
index fa6feda..59151c8
--- a/src/jalview/binding/SequenceSet.java
+++ b/src/jalview/binding/SequenceSet.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.binding;
 
@@ -21,6 +24,8 @@ package jalview.binding;
 //- Imported classes and packages -/
 //---------------------------------/
 
+import jalview.util.MessageManager;
+
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -183,9 +188,11 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._annotationList.size())
     {
-      throw new IndexOutOfBoundsException("getAnnotation: Index value '"
-              + index + "' not in range [0.."
-              + (this._annotationList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "getAnnotation",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._annotationList.size() - 1)).toString()
+        })); 
     }
 
     return (jalview.binding.Annotation) _annotationList.get(index);
@@ -241,9 +248,11 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceList.size())
     {
-      throw new IndexOutOfBoundsException("getSequence: Index value '"
-              + index + "' not in range [0.."
-              + (this._sequenceList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "getSequence",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._sequenceList.size() - 1)).toString()
+          })); 
     }
 
     return (jalview.binding.Sequence) _sequenceList.get(index);
@@ -438,9 +447,11 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._annotationList.size())
     {
-      throw new IndexOutOfBoundsException("setAnnotation: Index value '"
-              + index + "' not in range [0.."
-              + (this._annotationList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "setAnnotation",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._annotationList.size() - 1)).toString()
+        })); 
     }
 
     this._annotationList.set(index, vAnnotation);
@@ -489,9 +500,11 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceList.size())
     {
-      throw new IndexOutOfBoundsException("setSequence: Index value '"
-              + index + "' not in range [0.."
-              + (this._sequenceList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "setSequence",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._sequenceList.size() - 1)).toString()
+          })); 
     }
 
     this._sequenceList.set(index, vSequence);