X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FSequenceType.java;h=3a935e48fc67a2d4e00aae81a751059e446593cf;hb=d61d08aa6049a77d60d83a52cabc355c7c39ae62;hp=6060e77dccd4894d44214d9e42b77f244dbf73db;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git diff --git a/src/jalview/binding/SequenceType.java b/src/jalview/binding/SequenceType.java index 6060e77..3a935e4 100755 --- a/src/jalview/binding/SequenceType.java +++ b/src/jalview/binding/SequenceType.java @@ -1,53 +1,36 @@ /* - * This class was automatically generated with + * This class was automatically generated with * Castor 0.9.6, using an XML * Schema. * $Id$ */ -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package jalview.binding; - -import org.exolab.castor.xml.MarshalException; -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; -import org.xml.sax.ContentHandler; +package jalview.binding; + //---------------------------------/ + //- Imported classes and packages -/ //---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ + import java.io.IOException; import java.io.Reader; import java.io.Serializable; import java.io.Writer; - +import org.exolab.castor.xml.MarshalException; +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; +import org.exolab.castor.xml.ValidationException; +import org.xml.sax.ContentHandler; /** * Class SequenceType. - * + * * @version $Revision$ $Date$ */ public class SequenceType implements java.io.Serializable { - //--------------------------/ - //- Class/Member Variables -/ + + + //--------------------------/ + //- Class/Member Variables -/ //--------------------------/ /** @@ -65,141 +48,152 @@ public class SequenceType implements java.io.Serializable { */ private java.lang.String _name; + + //----------------/ + //- Constructors -/ //----------------/ - //- Constructors -/ - //----------------/ + public SequenceType() { super(); - } - //-- jalview.binding.SequenceType() - //-----------/ + } //-- jalview.binding.SequenceType() + - public java.lang.String getId() { + //-----------/ + //- Methods -/ + //-----------/ + + /** + * Returns the value of field 'id'. + * + * @return String + * @return the value of field 'id'. + */ + public java.lang.String getId() + { return this._id; - } - //-- java.lang.String getId() + } //-- java.lang.String getId() /** * Returns the value of field 'name'. - * + * * @return String * @return the value of field 'name'. */ - public java.lang.String getName() { + public java.lang.String getName() + { return this._name; - } - //-- java.lang.String getName() + } //-- java.lang.String getName() /** * Returns the value of field 'sequence'. - * + * * @return String * @return the value of field 'sequence'. */ - public java.lang.String getSequence() { + public java.lang.String getSequence() + { return this._sequence; - } - //-- java.lang.String getSequence() + } //-- java.lang.String getSequence() /** * Method isValid - * - * - * + * + * + * * @return boolean */ - public boolean isValid() { + public boolean isValid() + { try { validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { + } + catch (org.exolab.castor.xml.ValidationException vex) { return false; } - return true; - } - //-- boolean isValid() + } //-- boolean isValid() /** * Method marshal - * - * - * + * + * + * * @param out */ public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, out); - } - //-- void marshal(java.io.Writer) + } //-- void marshal(java.io.Writer) /** * Method marshal - * - * - * + * + * + * * @param handler */ public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, handler); - } - //-- void marshal(org.xml.sax.ContentHandler) + } //-- void marshal(org.xml.sax.ContentHandler) /** * Sets the value of field 'id'. - * + * * @param id the value of field 'id'. */ - public void setId(java.lang.String id) { + public void setId(java.lang.String id) + { this._id = id; - } - //-- void setId(java.lang.String) + } //-- void setId(java.lang.String) /** * Sets the value of field 'name'. - * + * * @param name the value of field 'name'. */ - public void setName(java.lang.String name) { + public void setName(java.lang.String name) + { this._name = name; - } - //-- void setName(java.lang.String) + } //-- void setName(java.lang.String) /** * Sets the value of field 'sequence'. - * + * * @param sequence the value of field 'sequence'. */ - public void setSequence(java.lang.String sequence) { + public void setSequence(java.lang.String sequence) + { this._sequence = sequence; - } - //-- void setSequence(java.lang.String) + } //-- void setSequence(java.lang.String) /** * Method unmarshal - * - * - * + * + * + * * @param reader * @return Object */ public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { - return (jalview.binding.SequenceType) Unmarshaller.unmarshal(jalview.binding.SequenceType.class, - reader); - } - //-- java.lang.Object unmarshal(java.io.Reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException + { + return (jalview.binding.SequenceType) Unmarshaller.unmarshal(jalview.binding.SequenceType.class, reader); + } //-- java.lang.Object unmarshal(java.io.Reader) /** * Method validate - * + * */ - public void validate() throws org.exolab.castor.xml.ValidationException { + public void validate() + throws org.exolab.castor.xml.ValidationException + { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } - //-- void validate() + } //-- void validate() + }