X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FSequenceType.java;h=780c8ba57e63854c927721f283c07b68dae97475;hb=b8d09897dacc7b0ad203982b4578e2c1d8929142;hp=6060e77dccd4894d44214d9e42b77f244dbf73db;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/binding/SequenceType.java b/src/jalview/binding/SequenceType.java
index 6060e77..780c8ba 100755
--- a/src/jalview/binding/SequenceType.java
+++ b/src/jalview/binding/SequenceType.java
@@ -4,202 +4,195 @@
  * Schema.
  * $Id$
  */
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-package jalview.binding;
 
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-
-import org.xml.sax.ContentHandler;
+package jalview.binding;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
 
+import org.exolab.castor.xml.*;
 
 /**
  * Class SequenceType.
  *
  * @version $Revision$ $Date$
  */
-public class SequenceType implements java.io.Serializable {
-    //--------------------------/
-    //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _id
-     */
-    private java.lang.String _id;
-
-    /**
-     * Field _sequence
-     */
-    private java.lang.String _sequence;
-
-    /**
-     * Field _name
-     */
-    private java.lang.String _name;
-
-    //----------------/
-    //- Constructors -/
-    //----------------/
-    public SequenceType() {
-        super();
-    }
-     //-- jalview.binding.SequenceType()
- //-----------/
-
-    public java.lang.String getId() {
-        return this._id;
-    }
-     //-- java.lang.String getId()
-
-    /**
-     * Returns the value of field 'name'.
-     *
-     * @return String
-     * @return the value of field 'name'.
-     */
-    public java.lang.String getName() {
-        return this._name;
-    }
-     //-- java.lang.String getName()
-
-    /**
-     * Returns the value of field 'sequence'.
-     *
-     * @return String
-     * @return the value of field 'sequence'.
-     */
-    public java.lang.String getSequence() {
-        return this._sequence;
+public class SequenceType
+    implements java.io.Serializable
+{
+
+  //--------------------------/
+  //- Class/Member Variables -/
+  //--------------------------/
+
+  /**
+   * Field _id
+   */
+  private java.lang.String _id;
+
+  /**
+   * Field _sequence
+   */
+  private java.lang.String _sequence;
+
+  /**
+   * Field _name
+   */
+  private java.lang.String _name;
+
+  //----------------/
+  //- Constructors -/
+  //----------------/
+
+  public SequenceType()
+  {
+    super();
+  } //-- jalview.binding.SequenceType()
+
+  //-----------/
+  //- Methods -/
+  //-----------/
+
+  /**
+   * Returns the value of field 'id'.
+   *
+   * @return String
+   * @return the value of field 'id'.
+   */
+  public java.lang.String getId()
+  {
+    return this._id;
+  } //-- java.lang.String getId()
+
+  /**
+   * Returns the value of field 'name'.
+   *
+   * @return String
+   * @return the value of field 'name'.
+   */
+  public java.lang.String getName()
+  {
+    return this._name;
+  } //-- java.lang.String getName()
+
+  /**
+   * Returns the value of field 'sequence'.
+   *
+   * @return String
+   * @return the value of field 'sequence'.
+   */
+  public java.lang.String getSequence()
+  {
+    return this._sequence;
+  } //-- java.lang.String getSequence()
+
+  /**
+   * Method isValid
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean isValid()
+  {
+    try
+    {
+      validate();
     }
-     //-- java.lang.String getSequence()
-
-    /**
-     * Method isValid
-     *
-     *
-     *
-     * @return boolean
-     */
-    public boolean isValid() {
-        try {
-            validate();
-        } catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-
-        return true;
+    catch (org.exolab.castor.xml.ValidationException vex)
+    {
+      return false;
     }
-     //-- boolean isValid()
-
-    /**
-     * Method marshal
-     *
-     *
-     *
-     * @param out
-     */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, 
-            org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, out);
-    }
-     //-- void marshal(java.io.Writer)
-
-    /**
-     * Method marshal
-     *
-     *
-     *
-     * @param handler
-     */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
-            org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, handler);
-    }
-     //-- void marshal(org.xml.sax.ContentHandler)
-
-    /**
-     * Sets the value of field 'id'.
-     *
-     * @param id the value of field 'id'.
-     */
-    public void setId(java.lang.String id) {
-        this._id = id;
-    }
-     //-- void setId(java.lang.String)
-
-    /**
-     * Sets the value of field 'name'.
-     *
-     * @param name the value of field 'name'.
-     */
-    public void setName(java.lang.String name) {
-        this._name = name;
-    }
-     //-- void setName(java.lang.String)
-
-    /**
-     * Sets the value of field 'sequence'.
-     *
-     * @param sequence the value of field 'sequence'.
-     */
-    public void setSequence(java.lang.String sequence) {
-        this._sequence = sequence;
-    }
-     //-- void setSequence(java.lang.String)
-
-    /**
-     * Method unmarshal
-     *
-     *
-     *
-     * @param reader
-     * @return Object
-     */
-    public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, 
-            org.exolab.castor.xml.ValidationException {
-        return (jalview.binding.SequenceType) Unmarshaller.unmarshal(jalview.binding.SequenceType.class,
-            reader);
-    }
-     //-- java.lang.Object unmarshal(java.io.Reader)
-
-    /**
-     * Method validate
-     *
-     */
-    public void validate() throws org.exolab.castor.xml.ValidationException {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    }
-     //-- void validate()
+    return true;
+  } //-- boolean isValid()
+
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param out
+   */
+  public void marshal(java.io.Writer out)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+
+    Marshaller.marshal(this, out);
+  } //-- void marshal(java.io.Writer)
+
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param handler
+   */
+  public void marshal(org.xml.sax.ContentHandler handler)
+      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+
+    Marshaller.marshal(this, handler);
+  } //-- void marshal(org.xml.sax.ContentHandler)
+
+  /**
+   * Sets the value of field 'id'.
+   *
+   * @param id the value of field 'id'.
+   */
+  public void setId(java.lang.String id)
+  {
+    this._id = id;
+  } //-- void setId(java.lang.String)
+
+  /**
+   * Sets the value of field 'name'.
+   *
+   * @param name the value of field 'name'.
+   */
+  public void setName(java.lang.String name)
+  {
+    this._name = name;
+  } //-- void setName(java.lang.String)
+
+  /**
+   * Sets the value of field 'sequence'.
+   *
+   * @param sequence the value of field 'sequence'.
+   */
+  public void setSequence(java.lang.String sequence)
+  {
+    this._sequence = sequence;
+  } //-- void setSequence(java.lang.String)
+
+  /**
+   * Method unmarshal
+   *
+   *
+   *
+   * @param reader
+   * @return Object
+   */
+  public static java.lang.Object unmarshal(java.io.Reader reader)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.binding.SequenceType) Unmarshaller.unmarshal(jalview.
+        binding.SequenceType.class, reader);
+  } //-- java.lang.Object unmarshal(java.io.Reader)
+
+  /**
+   * Method validate
+   *
+   */
+  public void validate()
+      throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
+        Validator();
+    validator.validate(this);
+  } //-- void validate()
+
 }