X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FVAMSAS.java;h=0bb696abc03a82b5a16820f45266590d6ae8bde0;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=c06de295e68d9d8763e8bba6b772c15013ee9c94;hpb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;p=jalview.git

diff --git a/src/jalview/binding/VAMSAS.java b/src/jalview/binding/VAMSAS.java
index c06de29..0bb696a 100644
--- a/src/jalview/binding/VAMSAS.java
+++ b/src/jalview/binding/VAMSAS.java
@@ -1,16 +1,31 @@
 /*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-
 package jalview.binding;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
+import jalview.util.MessageManager;
+
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -182,9 +197,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._alignmentList.size())
     {
-      throw new IndexOutOfBoundsException("getAlignment: Index value '"
-              + index + "' not in range [0.."
-              + (this._alignmentList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "getAlignment",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._alignmentList.size() - 1)).toString()
+        })); 
     }
 
     return (Alignment) _alignmentList.get(index);
@@ -229,9 +246,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceSetList.size())
     {
-      throw new IndexOutOfBoundsException("getSequenceSet: Index value '"
-              + index + "' not in range [0.."
-              + (this._sequenceSetList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "getSequenceSet",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
+          })); 
     }
 
     return (SequenceSet) _sequenceSetList.get(index);
@@ -276,8 +295,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("getTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "getTree",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._treeList.size() - 1)).toString()
+        })); 
     }
 
     return (java.lang.String) _treeList.get(index);
@@ -469,9 +491,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._alignmentList.size())
     {
-      throw new IndexOutOfBoundsException("setAlignment: Index value '"
-              + index + "' not in range [0.."
-              + (this._alignmentList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "setAlignment",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._alignmentList.size() - 1)).toString()
+          })); 
     }
 
     this._alignmentList.set(index, vAlignment);
@@ -507,9 +531,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceSetList.size())
     {
-      throw new IndexOutOfBoundsException("setSequenceSet: Index value '"
-              + index + "' not in range [0.."
-              + (this._sequenceSetList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "setSequenceSet",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
+        })); 
     }
 
     this._sequenceSetList.set(index, vSequenceSet);
@@ -545,8 +571,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("setTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "setTree",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._treeList.size() - 1)).toString()
+          })); 
     }
 
     this._treeList.set(index, vTree);