X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FVAMSAS.java;h=c06de295e68d9d8763e8bba6b772c15013ee9c94;hb=9876fdccf311378e690c1f9e18db52675d427b89;hp=bd4ea408a309bd43f98060c21664564d47f08454;hpb=aced09c4feeaf3406269442c14e54abeeb4cad81;p=jalview.git
diff --git a/src/jalview/binding/VAMSAS.java b/src/jalview/binding/VAMSAS.java
index bd4ea40..c06de29 100644
--- a/src/jalview/binding/VAMSAS.java
+++ b/src/jalview/binding/VAMSAS.java
@@ -1,31 +1,16 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see .
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with
+ * Castor 1.1, using an XML
+ * Schema.
+ * $Id$
*/
+
package jalview.binding;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
-import jalview.util.MessageManager;
-
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
@@ -197,11 +182,9 @@ public class VAMSAS implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._alignmentList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getAlignment",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._alignmentList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getAlignment: Index value '"
+ + index + "' not in range [0.."
+ + (this._alignmentList.size() - 1) + "]");
}
return (Alignment) _alignmentList.get(index);
@@ -246,11 +229,9 @@ public class VAMSAS implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceSetList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getSequenceSet",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getSequenceSet: Index value '"
+ + index + "' not in range [0.."
+ + (this._sequenceSetList.size() - 1) + "]");
}
return (SequenceSet) _sequenceSetList.get(index);
@@ -295,11 +276,8 @@ public class VAMSAS implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._treeList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getTree",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._treeList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getTree: Index value '" + index
+ + "' not in range [0.." + (this._treeList.size() - 1) + "]");
}
return (java.lang.String) _treeList.get(index);
@@ -491,11 +469,9 @@ public class VAMSAS implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._alignmentList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setAlignment",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._alignmentList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setAlignment: Index value '"
+ + index + "' not in range [0.."
+ + (this._alignmentList.size() - 1) + "]");
}
this._alignmentList.set(index, vAlignment);
@@ -531,11 +507,9 @@ public class VAMSAS implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceSetList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setSequenceSet",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setSequenceSet: Index value '"
+ + index + "' not in range [0.."
+ + (this._sequenceSetList.size() - 1) + "]");
}
this._sequenceSetList.set(index, vSequenceSet);
@@ -571,11 +545,8 @@ public class VAMSAS implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._treeList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setTree",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._treeList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setTree: Index value '" + index
+ + "' not in range [0.." + (this._treeList.size() - 1) + "]");
}
this._treeList.set(index, vTree);