X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FViewport.java;h=07622b36a63923c809dfb08ad4e34c740121598c;hb=b8d09897dacc7b0ad203982b4578e2c1d8929142;hp=8bdee5d580bb22dce6f77353463e26f1b7c95dd6;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git diff --git a/src/jalview/binding/Viewport.java b/src/jalview/binding/Viewport.java index 8bdee5d..07622b3 100755 --- a/src/jalview/binding/Viewport.java +++ b/src/jalview/binding/Viewport.java @@ -1,1428 +1,1419 @@ /* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -/* * This class was automatically generated with * Castor 0.9.6, using an XML * Schema. * $Id$ */ -package jalview.binding; -import org.exolab.castor.xml.MarshalException; -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; - -import org.xml.sax.ContentHandler; +package jalview.binding; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ -import java.io.IOException; -import java.io.Reader; -import java.io.Serializable; -import java.io.Writer; +import org.exolab.castor.xml.*; /** * Class Viewport. * * @version $Revision$ $Date$ */ -public class Viewport implements java.io.Serializable { - //--------------------------/ - //- Class/Member Variables -/ - //--------------------------/ - - /** - * Field _conservationSelected - */ - private boolean _conservationSelected; - - /** - * keeps track of state for field: _conservationSelected - */ - private boolean _has_conservationSelected; - - /** - * Field _pidSelected - */ - private boolean _pidSelected; - - /** - * keeps track of state for field: _pidSelected - */ - private boolean _has_pidSelected; - - /** - * Field _bgColour - */ - private java.lang.String _bgColour; - - /** - * Field _consThreshold - */ - private int _consThreshold; - - /** - * keeps track of state for field: _consThreshold - */ - private boolean _has_consThreshold; - - /** - * Field _pidThreshold - */ - private int _pidThreshold; - - /** - * keeps track of state for field: _pidThreshold - */ - private boolean _has_pidThreshold; - - /** - * Field _title - */ - private java.lang.String _title; - - /** - * Field _showFullId - */ - private boolean _showFullId; - - /** - * keeps track of state for field: _showFullId - */ - private boolean _has_showFullId; - - /** - * Field _showText - */ - private boolean _showText; - - /** - * keeps track of state for field: _showText - */ - private boolean _has_showText; - - /** - * Field _showColourText - */ - private boolean _showColourText; - - /** - * keeps track of state for field: _showColourText - */ - private boolean _has_showColourText; - - /** - * Field _showBoxes - */ - private boolean _showBoxes; - - /** - * keeps track of state for field: _showBoxes - */ - private boolean _has_showBoxes; - - /** - * Field _wrapAlignment - */ - private boolean _wrapAlignment; - - /** - * keeps track of state for field: _wrapAlignment - */ - private boolean _has_wrapAlignment; - - /** - * Field _renderGaps - */ - private boolean _renderGaps; - - /** - * keeps track of state for field: _renderGaps - */ - private boolean _has_renderGaps; - - /** - * Field _showSequenceFeatures - */ - private boolean _showSequenceFeatures; - - /** - * keeps track of state for field: _showSequenceFeatures - */ - private boolean _has_showSequenceFeatures; - - /** - * Field _showAnnotation - */ - private boolean _showAnnotation; - - /** - * keeps track of state for field: _showAnnotation - */ - private boolean _has_showAnnotation; - - /** - * Field _showConservation - */ - private boolean _showConservation; - - /** - * keeps track of state for field: _showConservation - */ - private boolean _has_showConservation; - - /** - * Field _showQuality - */ - private boolean _showQuality; - - /** - * keeps track of state for field: _showQuality - */ - private boolean _has_showQuality; - - /** - * Field _showIdentity - */ - private boolean _showIdentity; - - /** - * keeps track of state for field: _showIdentity - */ - private boolean _has_showIdentity; - - /** - * Field _xpos - */ - private int _xpos; - - /** - * keeps track of state for field: _xpos - */ - private boolean _has_xpos; - - /** - * Field _ypos - */ - private int _ypos; - - /** - * keeps track of state for field: _ypos - */ - private boolean _has_ypos; - - /** - * Field _width - */ - private int _width; - - /** - * keeps track of state for field: _width - */ - private boolean _has_width; - - /** - * Field _height - */ - private int _height; - - /** - * keeps track of state for field: _height - */ - private boolean _has_height; - - /** - * Field _startRes - */ - private int _startRes; - - /** - * keeps track of state for field: _startRes - */ - private boolean _has_startRes; - - /** - * Field _startSeq - */ - private int _startSeq; - - /** - * keeps track of state for field: _startSeq - */ - private boolean _has_startSeq; - - /** - * Field _fontName - */ - private java.lang.String _fontName; - - /** - * Field _fontSize - */ - private int _fontSize; - - /** - * keeps track of state for field: _fontSize - */ - private boolean _has_fontSize; - - /** - * Field _fontStyle - */ - private int _fontStyle; - - /** - * keeps track of state for field: _fontStyle - */ - private boolean _has_fontStyle; - - //----------------/ - //- Constructors -/ - //----------------/ - public Viewport() { - super(); - } - //-- jalview.binding.Viewport() - //-----------/ +public class Viewport + implements java.io.Serializable +{ + + //--------------------------/ + //- Class/Member Variables -/ + //--------------------------/ + + /** + * Field _conservationSelected + */ + private boolean _conservationSelected; + + /** + * keeps track of state for field: _conservationSelected + */ + private boolean _has_conservationSelected; + + /** + * Field _pidSelected + */ + private boolean _pidSelected; + + /** + * keeps track of state for field: _pidSelected + */ + private boolean _has_pidSelected; + + /** + * Field _bgColour + */ + private java.lang.String _bgColour; + + /** + * Field _consThreshold + */ + private int _consThreshold; + + /** + * keeps track of state for field: _consThreshold + */ + private boolean _has_consThreshold; + + /** + * Field _pidThreshold + */ + private int _pidThreshold; + + /** + * keeps track of state for field: _pidThreshold + */ + private boolean _has_pidThreshold; + + /** + * Field _title + */ + private java.lang.String _title; + + /** + * Field _showFullId + */ + private boolean _showFullId; + + /** + * keeps track of state for field: _showFullId + */ + private boolean _has_showFullId; + + /** + * Field _showText + */ + private boolean _showText; + + /** + * keeps track of state for field: _showText + */ + private boolean _has_showText; + + /** + * Field _showColourText + */ + private boolean _showColourText; + + /** + * keeps track of state for field: _showColourText + */ + private boolean _has_showColourText; + + /** + * Field _showBoxes + */ + private boolean _showBoxes; + + /** + * keeps track of state for field: _showBoxes + */ + private boolean _has_showBoxes; + + /** + * Field _wrapAlignment + */ + private boolean _wrapAlignment; + + /** + * keeps track of state for field: _wrapAlignment + */ + private boolean _has_wrapAlignment; + + /** + * Field _renderGaps + */ + private boolean _renderGaps; + + /** + * keeps track of state for field: _renderGaps + */ + private boolean _has_renderGaps; + + /** + * Field _showSequenceFeatures + */ + private boolean _showSequenceFeatures; + + /** + * keeps track of state for field: _showSequenceFeatures + */ + private boolean _has_showSequenceFeatures; + + /** + * Field _showAnnotation + */ + private boolean _showAnnotation; + + /** + * keeps track of state for field: _showAnnotation + */ + private boolean _has_showAnnotation; + + /** + * Field _showConservation + */ + private boolean _showConservation; + + /** + * keeps track of state for field: _showConservation + */ + private boolean _has_showConservation; + + /** + * Field _showQuality + */ + private boolean _showQuality; + + /** + * keeps track of state for field: _showQuality + */ + private boolean _has_showQuality; + + /** + * Field _showIdentity + */ + private boolean _showIdentity; + + /** + * keeps track of state for field: _showIdentity + */ + private boolean _has_showIdentity; + + /** + * Field _xpos + */ + private int _xpos; + + /** + * keeps track of state for field: _xpos + */ + private boolean _has_xpos; + + /** + * Field _ypos + */ + private int _ypos; + + /** + * keeps track of state for field: _ypos + */ + private boolean _has_ypos; + + /** + * Field _width + */ + private int _width; + + /** + * keeps track of state for field: _width + */ + private boolean _has_width; + + /** + * Field _height + */ + private int _height; + + /** + * keeps track of state for field: _height + */ + private boolean _has_height; + + /** + * Field _startRes + */ + private int _startRes; + + /** + * keeps track of state for field: _startRes + */ + private boolean _has_startRes; + + /** + * Field _startSeq + */ + private int _startSeq; + + /** + * keeps track of state for field: _startSeq + */ + private boolean _has_startSeq; + + /** + * Field _fontName + */ + private java.lang.String _fontName; + + /** + * Field _fontSize + */ + private int _fontSize; + + /** + * keeps track of state for field: _fontSize + */ + private boolean _has_fontSize; + + /** + * Field _fontStyle + */ + private int _fontStyle; + + /** + * keeps track of state for field: _fontStyle + */ + private boolean _has_fontStyle; + + //----------------/ + //- Constructors -/ + //----------------/ + + public Viewport() + { + super(); + } //-- jalview.binding.Viewport() + + //-----------/ + //- Methods -/ + //-----------/ + + /** + * Method deleteConsThreshold + * + */ + public void deleteConsThreshold() + { + this._has_consThreshold = false; + } //-- void deleteConsThreshold() + + /** + * Method deleteConservationSelected + * + */ + public void deleteConservationSelected() + { + this._has_conservationSelected = false; + } //-- void deleteConservationSelected() + + /** + * Method deleteFontSize + * + */ + public void deleteFontSize() + { + this._has_fontSize = false; + } //-- void deleteFontSize() + + /** + * Method deleteFontStyle + * + */ + public void deleteFontStyle() + { + this._has_fontStyle = false; + } //-- void deleteFontStyle() + + /** + * Method deleteHeight + * + */ + public void deleteHeight() + { + this._has_height = false; + } //-- void deleteHeight() + + /** + * Method deletePidSelected + * + */ + public void deletePidSelected() + { + this._has_pidSelected = false; + } //-- void deletePidSelected() + + /** + * Method deletePidThreshold + * + */ + public void deletePidThreshold() + { + this._has_pidThreshold = false; + } //-- void deletePidThreshold() + + /** + * Method deleteRenderGaps + * + */ + public void deleteRenderGaps() + { + this._has_renderGaps = false; + } //-- void deleteRenderGaps() + + /** + * Method deleteShowAnnotation + * + */ + public void deleteShowAnnotation() + { + this._has_showAnnotation = false; + } //-- void deleteShowAnnotation() + + /** + * Method deleteShowBoxes + * + */ + public void deleteShowBoxes() + { + this._has_showBoxes = false; + } //-- void deleteShowBoxes() + + /** + * Method deleteShowColourText + * + */ + public void deleteShowColourText() + { + this._has_showColourText = false; + } //-- void deleteShowColourText() + + /** + * Method deleteShowConservation + * + */ + public void deleteShowConservation() + { + this._has_showConservation = false; + } //-- void deleteShowConservation() + + /** + * Method deleteShowFullId + * + */ + public void deleteShowFullId() + { + this._has_showFullId = false; + } //-- void deleteShowFullId() + + /** + * Method deleteShowIdentity + * + */ + public void deleteShowIdentity() + { + this._has_showIdentity = false; + } //-- void deleteShowIdentity() + + /** + * Method deleteShowQuality + * + */ + public void deleteShowQuality() + { + this._has_showQuality = false; + } //-- void deleteShowQuality() + + /** + * Method deleteShowSequenceFeatures + * + */ + public void deleteShowSequenceFeatures() + { + this._has_showSequenceFeatures = false; + } //-- void deleteShowSequenceFeatures() + + /** + * Method deleteShowText + * + */ + public void deleteShowText() + { + this._has_showText = false; + } //-- void deleteShowText() + + /** + * Method deleteStartRes + * + */ + public void deleteStartRes() + { + this._has_startRes = false; + } //-- void deleteStartRes() + + /** + * Method deleteStartSeq + * + */ + public void deleteStartSeq() + { + this._has_startSeq = false; + } //-- void deleteStartSeq() + + /** + * Method deleteWidth + * + */ + public void deleteWidth() + { + this._has_width = false; + } //-- void deleteWidth() + + /** + * Method deleteWrapAlignment + * + */ + public void deleteWrapAlignment() + { + this._has_wrapAlignment = false; + } //-- void deleteWrapAlignment() + + /** + * Method deleteXpos + * + */ + public void deleteXpos() + { + this._has_xpos = false; + } //-- void deleteXpos() + + /** + * Method deleteYpos + * + */ + public void deleteYpos() + { + this._has_ypos = false; + } //-- void deleteYpos() + + /** + * Returns the value of field 'bgColour'. + * + * @return String + * @return the value of field 'bgColour'. + */ + public java.lang.String getBgColour() + { + return this._bgColour; + } //-- java.lang.String getBgColour() + + /** + * Returns the value of field 'consThreshold'. + * + * @return int + * @return the value of field 'consThreshold'. + */ + public int getConsThreshold() + { + return this._consThreshold; + } //-- int getConsThreshold() + + /** + * Returns the value of field 'conservationSelected'. + * + * @return boolean + * @return the value of field 'conservationSelected'. + */ + public boolean getConservationSelected() + { + return this._conservationSelected; + } //-- boolean getConservationSelected() + + /** + * Returns the value of field 'fontName'. + * + * @return String + * @return the value of field 'fontName'. + */ + public java.lang.String getFontName() + { + return this._fontName; + } //-- java.lang.String getFontName() + + /** + * Returns the value of field 'fontSize'. + * + * @return int + * @return the value of field 'fontSize'. + */ + public int getFontSize() + { + return this._fontSize; + } //-- int getFontSize() + + /** + * Returns the value of field 'fontStyle'. + * + * @return int + * @return the value of field 'fontStyle'. + */ + public int getFontStyle() + { + return this._fontStyle; + } //-- int getFontStyle() + + /** + * Returns the value of field 'height'. + * + * @return int + * @return the value of field 'height'. + */ + public int getHeight() + { + return this._height; + } //-- int getHeight() + + /** + * Returns the value of field 'pidSelected'. + * + * @return boolean + * @return the value of field 'pidSelected'. + */ + public boolean getPidSelected() + { + return this._pidSelected; + } //-- boolean getPidSelected() + + /** + * Returns the value of field 'pidThreshold'. + * + * @return int + * @return the value of field 'pidThreshold'. + */ + public int getPidThreshold() + { + return this._pidThreshold; + } //-- int getPidThreshold() + + /** + * Returns the value of field 'renderGaps'. + * + * @return boolean + * @return the value of field 'renderGaps'. + */ + public boolean getRenderGaps() + { + return this._renderGaps; + } //-- boolean getRenderGaps() + + /** + * Returns the value of field 'showAnnotation'. + * + * @return boolean + * @return the value of field 'showAnnotation'. + */ + public boolean getShowAnnotation() + { + return this._showAnnotation; + } //-- boolean getShowAnnotation() + + /** + * Returns the value of field 'showBoxes'. + * + * @return boolean + * @return the value of field 'showBoxes'. + */ + public boolean getShowBoxes() + { + return this._showBoxes; + } //-- boolean getShowBoxes() + + /** + * Returns the value of field 'showColourText'. + * + * @return boolean + * @return the value of field 'showColourText'. + */ + public boolean getShowColourText() + { + return this._showColourText; + } //-- boolean getShowColourText() + + /** + * Returns the value of field 'showConservation'. + * + * @return boolean + * @return the value of field 'showConservation'. + */ + public boolean getShowConservation() + { + return this._showConservation; + } //-- boolean getShowConservation() + + /** + * Returns the value of field 'showFullId'. + * + * @return boolean + * @return the value of field 'showFullId'. + */ + public boolean getShowFullId() + { + return this._showFullId; + } //-- boolean getShowFullId() + + /** + * Returns the value of field 'showIdentity'. + * + * @return boolean + * @return the value of field 'showIdentity'. + */ + public boolean getShowIdentity() + { + return this._showIdentity; + } //-- boolean getShowIdentity() + + /** + * Returns the value of field 'showQuality'. + * + * @return boolean + * @return the value of field 'showQuality'. + */ + public boolean getShowQuality() + { + return this._showQuality; + } //-- boolean getShowQuality() + + /** + * Returns the value of field 'showSequenceFeatures'. + * + * @return boolean + * @return the value of field 'showSequenceFeatures'. + */ + public boolean getShowSequenceFeatures() + { + return this._showSequenceFeatures; + } //-- boolean getShowSequenceFeatures() + + /** + * Returns the value of field 'showText'. + * + * @return boolean + * @return the value of field 'showText'. + */ + public boolean getShowText() + { + return this._showText; + } //-- boolean getShowText() + + /** + * Returns the value of field 'startRes'. + * + * @return int + * @return the value of field 'startRes'. + */ + public int getStartRes() + { + return this._startRes; + } //-- int getStartRes() + + /** + * Returns the value of field 'startSeq'. + * + * @return int + * @return the value of field 'startSeq'. + */ + public int getStartSeq() + { + return this._startSeq; + } //-- int getStartSeq() + + /** + * Returns the value of field 'title'. + * + * @return String + * @return the value of field 'title'. + */ + public java.lang.String getTitle() + { + return this._title; + } //-- java.lang.String getTitle() + + /** + * Returns the value of field 'width'. + * + * @return int + * @return the value of field 'width'. + */ + public int getWidth() + { + return this._width; + } //-- int getWidth() + + /** + * Returns the value of field 'wrapAlignment'. + * + * @return boolean + * @return the value of field 'wrapAlignment'. + */ + public boolean getWrapAlignment() + { + return this._wrapAlignment; + } //-- boolean getWrapAlignment() + + /** + * Returns the value of field 'xpos'. + * + * @return int + * @return the value of field 'xpos'. + */ + public int getXpos() + { + return this._xpos; + } //-- int getXpos() + + /** + * Returns the value of field 'ypos'. + * + * @return int + * @return the value of field 'ypos'. + */ + public int getYpos() + { + return this._ypos; + } //-- int getYpos() + + /** + * Method hasConsThreshold + * + * + * + * @return boolean + */ + public boolean hasConsThreshold() + { + return this._has_consThreshold; + } //-- boolean hasConsThreshold() + + /** + * Method hasConservationSelected + * + * + * + * @return boolean + */ + public boolean hasConservationSelected() + { + return this._has_conservationSelected; + } //-- boolean hasConservationSelected() + + /** + * Method hasFontSize + * + * + * + * @return boolean + */ + public boolean hasFontSize() + { + return this._has_fontSize; + } //-- boolean hasFontSize() + + /** + * Method hasFontStyle + * + * + * + * @return boolean + */ + public boolean hasFontStyle() + { + return this._has_fontStyle; + } //-- boolean hasFontStyle() + + /** + * Method hasHeight + * + * + * + * @return boolean + */ + public boolean hasHeight() + { + return this._has_height; + } //-- boolean hasHeight() + + /** + * Method hasPidSelected + * + * + * + * @return boolean + */ + public boolean hasPidSelected() + { + return this._has_pidSelected; + } //-- boolean hasPidSelected() + + /** + * Method hasPidThreshold + * + * + * + * @return boolean + */ + public boolean hasPidThreshold() + { + return this._has_pidThreshold; + } //-- boolean hasPidThreshold() + + /** + * Method hasRenderGaps + * + * + * + * @return boolean + */ + public boolean hasRenderGaps() + { + return this._has_renderGaps; + } //-- boolean hasRenderGaps() + + /** + * Method hasShowAnnotation + * + * + * + * @return boolean + */ + public boolean hasShowAnnotation() + { + return this._has_showAnnotation; + } //-- boolean hasShowAnnotation() + + /** + * Method hasShowBoxes + * + * + * + * @return boolean + */ + public boolean hasShowBoxes() + { + return this._has_showBoxes; + } //-- boolean hasShowBoxes() + + /** + * Method hasShowColourText + * + * + * + * @return boolean + */ + public boolean hasShowColourText() + { + return this._has_showColourText; + } //-- boolean hasShowColourText() + + /** + * Method hasShowConservation + * + * + * + * @return boolean + */ + public boolean hasShowConservation() + { + return this._has_showConservation; + } //-- boolean hasShowConservation() + + /** + * Method hasShowFullId + * + * + * + * @return boolean + */ + public boolean hasShowFullId() + { + return this._has_showFullId; + } //-- boolean hasShowFullId() + + /** + * Method hasShowIdentity + * + * + * + * @return boolean + */ + public boolean hasShowIdentity() + { + return this._has_showIdentity; + } //-- boolean hasShowIdentity() + + /** + * Method hasShowQuality + * + * + * + * @return boolean + */ + public boolean hasShowQuality() + { + return this._has_showQuality; + } //-- boolean hasShowQuality() + + /** + * Method hasShowSequenceFeatures + * + * + * + * @return boolean + */ + public boolean hasShowSequenceFeatures() + { + return this._has_showSequenceFeatures; + } //-- boolean hasShowSequenceFeatures() + + /** + * Method hasShowText + * + * + * + * @return boolean + */ + public boolean hasShowText() + { + return this._has_showText; + } //-- boolean hasShowText() + + /** + * Method hasStartRes + * + * + * + * @return boolean + */ + public boolean hasStartRes() + { + return this._has_startRes; + } //-- boolean hasStartRes() + + /** + * Method hasStartSeq + * + * + * + * @return boolean + */ + public boolean hasStartSeq() + { + return this._has_startSeq; + } //-- boolean hasStartSeq() + + /** + * Method hasWidth + * + * + * + * @return boolean + */ + public boolean hasWidth() + { + return this._has_width; + } //-- boolean hasWidth() + + /** + * Method hasWrapAlignment + * + * + * + * @return boolean + */ + public boolean hasWrapAlignment() + { + return this._has_wrapAlignment; + } //-- boolean hasWrapAlignment() + + /** + * Method hasXpos + * + * + * + * @return boolean + */ + public boolean hasXpos() + { + return this._has_xpos; + } //-- boolean hasXpos() + + /** + * Method hasYpos + * + * + * + * @return boolean + */ + public boolean hasYpos() + { + return this._has_ypos; + } //-- boolean hasYpos() + + /** + * Method isValid + * + * + * + * @return boolean + */ + public boolean isValid() + { + try + { + validate(); + } + catch (org.exolab.castor.xml.ValidationException vex) + { + return false; + } + return true; + } //-- boolean isValid() + + /** + * Method marshal + * + * + * + * @param out + */ + public void marshal(java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + + Marshaller.marshal(this, out); + } //-- void marshal(java.io.Writer) + + /** + * Method marshal + * + * + * + * @param handler + */ + public void marshal(org.xml.sax.ContentHandler handler) + throws java.io.IOException, org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + + Marshaller.marshal(this, handler); + } //-- void marshal(org.xml.sax.ContentHandler) + + /** + * Sets the value of field 'bgColour'. + * + * @param bgColour the value of field 'bgColour'. + */ + public void setBgColour(java.lang.String bgColour) + { + this._bgColour = bgColour; + } //-- void setBgColour(java.lang.String) + + /** + * Sets the value of field 'consThreshold'. + * + * @param consThreshold the value of field 'consThreshold'. + */ + public void setConsThreshold(int consThreshold) + { + this._consThreshold = consThreshold; + this._has_consThreshold = true; + } //-- void setConsThreshold(int) + + /** + * Sets the value of field 'conservationSelected'. + * + * @param conservationSelected the value of field + * 'conservationSelected'. + */ + public void setConservationSelected(boolean conservationSelected) + { + this._conservationSelected = conservationSelected; + this._has_conservationSelected = true; + } //-- void setConservationSelected(boolean) + + /** + * Sets the value of field 'fontName'. + * + * @param fontName the value of field 'fontName'. + */ + public void setFontName(java.lang.String fontName) + { + this._fontName = fontName; + } //-- void setFontName(java.lang.String) + + /** + * Sets the value of field 'fontSize'. + * + * @param fontSize the value of field 'fontSize'. + */ + public void setFontSize(int fontSize) + { + this._fontSize = fontSize; + this._has_fontSize = true; + } //-- void setFontSize(int) + + /** + * Sets the value of field 'fontStyle'. + * + * @param fontStyle the value of field 'fontStyle'. + */ + public void setFontStyle(int fontStyle) + { + this._fontStyle = fontStyle; + this._has_fontStyle = true; + } //-- void setFontStyle(int) + + /** + * Sets the value of field 'height'. + * + * @param height the value of field 'height'. + */ + public void setHeight(int height) + { + this._height = height; + this._has_height = true; + } //-- void setHeight(int) + + /** + * Sets the value of field 'pidSelected'. + * + * @param pidSelected the value of field 'pidSelected'. + */ + public void setPidSelected(boolean pidSelected) + { + this._pidSelected = pidSelected; + this._has_pidSelected = true; + } //-- void setPidSelected(boolean) + + /** + * Sets the value of field 'pidThreshold'. + * + * @param pidThreshold the value of field 'pidThreshold'. + */ + public void setPidThreshold(int pidThreshold) + { + this._pidThreshold = pidThreshold; + this._has_pidThreshold = true; + } //-- void setPidThreshold(int) + + /** + * Sets the value of field 'renderGaps'. + * + * @param renderGaps the value of field 'renderGaps'. + */ + public void setRenderGaps(boolean renderGaps) + { + this._renderGaps = renderGaps; + this._has_renderGaps = true; + } //-- void setRenderGaps(boolean) + + /** + * Sets the value of field 'showAnnotation'. + * + * @param showAnnotation the value of field 'showAnnotation'. + */ + public void setShowAnnotation(boolean showAnnotation) + { + this._showAnnotation = showAnnotation; + this._has_showAnnotation = true; + } //-- void setShowAnnotation(boolean) + + /** + * Sets the value of field 'showBoxes'. + * + * @param showBoxes the value of field 'showBoxes'. + */ + public void setShowBoxes(boolean showBoxes) + { + this._showBoxes = showBoxes; + this._has_showBoxes = true; + } //-- void setShowBoxes(boolean) + + /** + * Sets the value of field 'showColourText'. + * + * @param showColourText the value of field 'showColourText'. + */ + public void setShowColourText(boolean showColourText) + { + this._showColourText = showColourText; + this._has_showColourText = true; + } //-- void setShowColourText(boolean) + + /** + * Sets the value of field 'showConservation'. + * + * @param showConservation the value of field 'showConservation' + */ + public void setShowConservation(boolean showConservation) + { + this._showConservation = showConservation; + this._has_showConservation = true; + } //-- void setShowConservation(boolean) + + /** + * Sets the value of field 'showFullId'. + * + * @param showFullId the value of field 'showFullId'. + */ + public void setShowFullId(boolean showFullId) + { + this._showFullId = showFullId; + this._has_showFullId = true; + } //-- void setShowFullId(boolean) + + /** + * Sets the value of field 'showIdentity'. + * + * @param showIdentity the value of field 'showIdentity'. + */ + public void setShowIdentity(boolean showIdentity) + { + this._showIdentity = showIdentity; + this._has_showIdentity = true; + } //-- void setShowIdentity(boolean) + + /** + * Sets the value of field 'showQuality'. + * + * @param showQuality the value of field 'showQuality'. + */ + public void setShowQuality(boolean showQuality) + { + this._showQuality = showQuality; + this._has_showQuality = true; + } //-- void setShowQuality(boolean) + + /** + * Sets the value of field 'showSequenceFeatures'. + * + * @param showSequenceFeatures the value of field + * 'showSequenceFeatures'. + */ + public void setShowSequenceFeatures(boolean showSequenceFeatures) + { + this._showSequenceFeatures = showSequenceFeatures; + this._has_showSequenceFeatures = true; + } //-- void setShowSequenceFeatures(boolean) + + /** + * Sets the value of field 'showText'. + * + * @param showText the value of field 'showText'. + */ + public void setShowText(boolean showText) + { + this._showText = showText; + this._has_showText = true; + } //-- void setShowText(boolean) + + /** + * Sets the value of field 'startRes'. + * + * @param startRes the value of field 'startRes'. + */ + public void setStartRes(int startRes) + { + this._startRes = startRes; + this._has_startRes = true; + } //-- void setStartRes(int) + + /** + * Sets the value of field 'startSeq'. + * + * @param startSeq the value of field 'startSeq'. + */ + public void setStartSeq(int startSeq) + { + this._startSeq = startSeq; + this._has_startSeq = true; + } //-- void setStartSeq(int) + + /** + * Sets the value of field 'title'. + * + * @param title the value of field 'title'. + */ + public void setTitle(java.lang.String title) + { + this._title = title; + } //-- void setTitle(java.lang.String) + + /** + * Sets the value of field 'width'. + * + * @param width the value of field 'width'. + */ + public void setWidth(int width) + { + this._width = width; + this._has_width = true; + } //-- void setWidth(int) + + /** + * Sets the value of field 'wrapAlignment'. + * + * @param wrapAlignment the value of field 'wrapAlignment'. + */ + public void setWrapAlignment(boolean wrapAlignment) + { + this._wrapAlignment = wrapAlignment; + this._has_wrapAlignment = true; + } //-- void setWrapAlignment(boolean) + + /** + * Sets the value of field 'xpos'. + * + * @param xpos the value of field 'xpos'. + */ + public void setXpos(int xpos) + { + this._xpos = xpos; + this._has_xpos = true; + } //-- void setXpos(int) + + /** + * Sets the value of field 'ypos'. + * + * @param ypos the value of field 'ypos'. + */ + public void setYpos(int ypos) + { + this._ypos = ypos; + this._has_ypos = true; + } //-- void setYpos(int) + + /** + * Method unmarshal + * + * + * + * @param reader + * @return Object + */ + public static java.lang.Object unmarshal(java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + return (jalview.binding.Viewport) Unmarshaller.unmarshal(jalview.binding. + Viewport.class, reader); + } //-- java.lang.Object unmarshal(java.io.Reader) + + /** + * Method validate + * + */ + public void validate() + throws org.exolab.castor.xml.ValidationException + { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml. + Validator(); + validator.validate(this); + } //-- void validate() - public void deleteConsThreshold() { - this._has_consThreshold = false; - } - //-- void deleteConsThreshold() - - /** - * Method deleteConservationSelected - * - */ - public void deleteConservationSelected() { - this._has_conservationSelected = false; - } - //-- void deleteConservationSelected() - - /** - * Method deleteFontSize - * - */ - public void deleteFontSize() { - this._has_fontSize = false; - } - //-- void deleteFontSize() - - /** - * Method deleteFontStyle - * - */ - public void deleteFontStyle() { - this._has_fontStyle = false; - } - //-- void deleteFontStyle() - - /** - * Method deleteHeight - * - */ - public void deleteHeight() { - this._has_height = false; - } - //-- void deleteHeight() - - /** - * Method deletePidSelected - * - */ - public void deletePidSelected() { - this._has_pidSelected = false; - } - //-- void deletePidSelected() - - /** - * Method deletePidThreshold - * - */ - public void deletePidThreshold() { - this._has_pidThreshold = false; - } - //-- void deletePidThreshold() - - /** - * Method deleteRenderGaps - * - */ - public void deleteRenderGaps() { - this._has_renderGaps = false; - } - //-- void deleteRenderGaps() - - /** - * Method deleteShowAnnotation - * - */ - public void deleteShowAnnotation() { - this._has_showAnnotation = false; - } - //-- void deleteShowAnnotation() - - /** - * Method deleteShowBoxes - * - */ - public void deleteShowBoxes() { - this._has_showBoxes = false; - } - //-- void deleteShowBoxes() - - /** - * Method deleteShowColourText - * - */ - public void deleteShowColourText() { - this._has_showColourText = false; - } - //-- void deleteShowColourText() - - /** - * Method deleteShowConservation - * - */ - public void deleteShowConservation() { - this._has_showConservation = false; - } - //-- void deleteShowConservation() - - /** - * Method deleteShowFullId - * - */ - public void deleteShowFullId() { - this._has_showFullId = false; - } - //-- void deleteShowFullId() - - /** - * Method deleteShowIdentity - * - */ - public void deleteShowIdentity() { - this._has_showIdentity = false; - } - //-- void deleteShowIdentity() - - /** - * Method deleteShowQuality - * - */ - public void deleteShowQuality() { - this._has_showQuality = false; - } - //-- void deleteShowQuality() - - /** - * Method deleteShowSequenceFeatures - * - */ - public void deleteShowSequenceFeatures() { - this._has_showSequenceFeatures = false; - } - //-- void deleteShowSequenceFeatures() - - /** - * Method deleteShowText - * - */ - public void deleteShowText() { - this._has_showText = false; - } - //-- void deleteShowText() - - /** - * Method deleteStartRes - * - */ - public void deleteStartRes() { - this._has_startRes = false; - } - //-- void deleteStartRes() - - /** - * Method deleteStartSeq - * - */ - public void deleteStartSeq() { - this._has_startSeq = false; - } - //-- void deleteStartSeq() - - /** - * Method deleteWidth - * - */ - public void deleteWidth() { - this._has_width = false; - } - //-- void deleteWidth() - - /** - * Method deleteWrapAlignment - * - */ - public void deleteWrapAlignment() { - this._has_wrapAlignment = false; - } - //-- void deleteWrapAlignment() - - /** - * Method deleteXpos - * - */ - public void deleteXpos() { - this._has_xpos = false; - } - //-- void deleteXpos() - - /** - * Method deleteYpos - * - */ - public void deleteYpos() { - this._has_ypos = false; - } - //-- void deleteYpos() - - /** - * Returns the value of field 'bgColour'. - * - * @return String - * @return the value of field 'bgColour'. - */ - public java.lang.String getBgColour() { - return this._bgColour; - } - //-- java.lang.String getBgColour() - - /** - * Returns the value of field 'consThreshold'. - * - * @return int - * @return the value of field 'consThreshold'. - */ - public int getConsThreshold() { - return this._consThreshold; - } - //-- int getConsThreshold() - - /** - * Returns the value of field 'conservationSelected'. - * - * @return boolean - * @return the value of field 'conservationSelected'. - */ - public boolean getConservationSelected() { - return this._conservationSelected; - } - //-- boolean getConservationSelected() - - /** - * Returns the value of field 'fontName'. - * - * @return String - * @return the value of field 'fontName'. - */ - public java.lang.String getFontName() { - return this._fontName; - } - //-- java.lang.String getFontName() - - /** - * Returns the value of field 'fontSize'. - * - * @return int - * @return the value of field 'fontSize'. - */ - public int getFontSize() { - return this._fontSize; - } - //-- int getFontSize() - - /** - * Returns the value of field 'fontStyle'. - * - * @return int - * @return the value of field 'fontStyle'. - */ - public int getFontStyle() { - return this._fontStyle; - } - //-- int getFontStyle() - - /** - * Returns the value of field 'height'. - * - * @return int - * @return the value of field 'height'. - */ - public int getHeight() { - return this._height; - } - //-- int getHeight() - - /** - * Returns the value of field 'pidSelected'. - * - * @return boolean - * @return the value of field 'pidSelected'. - */ - public boolean getPidSelected() { - return this._pidSelected; - } - //-- boolean getPidSelected() - - /** - * Returns the value of field 'pidThreshold'. - * - * @return int - * @return the value of field 'pidThreshold'. - */ - public int getPidThreshold() { - return this._pidThreshold; - } - //-- int getPidThreshold() - - /** - * Returns the value of field 'renderGaps'. - * - * @return boolean - * @return the value of field 'renderGaps'. - */ - public boolean getRenderGaps() { - return this._renderGaps; - } - //-- boolean getRenderGaps() - - /** - * Returns the value of field 'showAnnotation'. - * - * @return boolean - * @return the value of field 'showAnnotation'. - */ - public boolean getShowAnnotation() { - return this._showAnnotation; - } - //-- boolean getShowAnnotation() - - /** - * Returns the value of field 'showBoxes'. - * - * @return boolean - * @return the value of field 'showBoxes'. - */ - public boolean getShowBoxes() { - return this._showBoxes; - } - //-- boolean getShowBoxes() - - /** - * Returns the value of field 'showColourText'. - * - * @return boolean - * @return the value of field 'showColourText'. - */ - public boolean getShowColourText() { - return this._showColourText; - } - //-- boolean getShowColourText() - - /** - * Returns the value of field 'showConservation'. - * - * @return boolean - * @return the value of field 'showConservation'. - */ - public boolean getShowConservation() { - return this._showConservation; - } - //-- boolean getShowConservation() - - /** - * Returns the value of field 'showFullId'. - * - * @return boolean - * @return the value of field 'showFullId'. - */ - public boolean getShowFullId() { - return this._showFullId; - } - //-- boolean getShowFullId() - - /** - * Returns the value of field 'showIdentity'. - * - * @return boolean - * @return the value of field 'showIdentity'. - */ - public boolean getShowIdentity() { - return this._showIdentity; - } - //-- boolean getShowIdentity() - - /** - * Returns the value of field 'showQuality'. - * - * @return boolean - * @return the value of field 'showQuality'. - */ - public boolean getShowQuality() { - return this._showQuality; - } - //-- boolean getShowQuality() - - /** - * Returns the value of field 'showSequenceFeatures'. - * - * @return boolean - * @return the value of field 'showSequenceFeatures'. - */ - public boolean getShowSequenceFeatures() { - return this._showSequenceFeatures; - } - //-- boolean getShowSequenceFeatures() - - /** - * Returns the value of field 'showText'. - * - * @return boolean - * @return the value of field 'showText'. - */ - public boolean getShowText() { - return this._showText; - } - //-- boolean getShowText() - - /** - * Returns the value of field 'startRes'. - * - * @return int - * @return the value of field 'startRes'. - */ - public int getStartRes() { - return this._startRes; - } - //-- int getStartRes() - - /** - * Returns the value of field 'startSeq'. - * - * @return int - * @return the value of field 'startSeq'. - */ - public int getStartSeq() { - return this._startSeq; - } - //-- int getStartSeq() - - /** - * Returns the value of field 'title'. - * - * @return String - * @return the value of field 'title'. - */ - public java.lang.String getTitle() { - return this._title; - } - //-- java.lang.String getTitle() - - /** - * Returns the value of field 'width'. - * - * @return int - * @return the value of field 'width'. - */ - public int getWidth() { - return this._width; - } - //-- int getWidth() - - /** - * Returns the value of field 'wrapAlignment'. - * - * @return boolean - * @return the value of field 'wrapAlignment'. - */ - public boolean getWrapAlignment() { - return this._wrapAlignment; - } - //-- boolean getWrapAlignment() - - /** - * Returns the value of field 'xpos'. - * - * @return int - * @return the value of field 'xpos'. - */ - public int getXpos() { - return this._xpos; - } - //-- int getXpos() - - /** - * Returns the value of field 'ypos'. - * - * @return int - * @return the value of field 'ypos'. - */ - public int getYpos() { - return this._ypos; - } - //-- int getYpos() - - /** - * Method hasConsThreshold - * - * - * - * @return boolean - */ - public boolean hasConsThreshold() { - return this._has_consThreshold; - } - //-- boolean hasConsThreshold() - - /** - * Method hasConservationSelected - * - * - * - * @return boolean - */ - public boolean hasConservationSelected() { - return this._has_conservationSelected; - } - //-- boolean hasConservationSelected() - - /** - * Method hasFontSize - * - * - * - * @return boolean - */ - public boolean hasFontSize() { - return this._has_fontSize; - } - //-- boolean hasFontSize() - - /** - * Method hasFontStyle - * - * - * - * @return boolean - */ - public boolean hasFontStyle() { - return this._has_fontStyle; - } - //-- boolean hasFontStyle() - - /** - * Method hasHeight - * - * - * - * @return boolean - */ - public boolean hasHeight() { - return this._has_height; - } - //-- boolean hasHeight() - - /** - * Method hasPidSelected - * - * - * - * @return boolean - */ - public boolean hasPidSelected() { - return this._has_pidSelected; - } - //-- boolean hasPidSelected() - - /** - * Method hasPidThreshold - * - * - * - * @return boolean - */ - public boolean hasPidThreshold() { - return this._has_pidThreshold; - } - //-- boolean hasPidThreshold() - - /** - * Method hasRenderGaps - * - * - * - * @return boolean - */ - public boolean hasRenderGaps() { - return this._has_renderGaps; - } - //-- boolean hasRenderGaps() - - /** - * Method hasShowAnnotation - * - * - * - * @return boolean - */ - public boolean hasShowAnnotation() { - return this._has_showAnnotation; - } - //-- boolean hasShowAnnotation() - - /** - * Method hasShowBoxes - * - * - * - * @return boolean - */ - public boolean hasShowBoxes() { - return this._has_showBoxes; - } - //-- boolean hasShowBoxes() - - /** - * Method hasShowColourText - * - * - * - * @return boolean - */ - public boolean hasShowColourText() { - return this._has_showColourText; - } - //-- boolean hasShowColourText() - - /** - * Method hasShowConservation - * - * - * - * @return boolean - */ - public boolean hasShowConservation() { - return this._has_showConservation; - } - //-- boolean hasShowConservation() - - /** - * Method hasShowFullId - * - * - * - * @return boolean - */ - public boolean hasShowFullId() { - return this._has_showFullId; - } - //-- boolean hasShowFullId() - - /** - * Method hasShowIdentity - * - * - * - * @return boolean - */ - public boolean hasShowIdentity() { - return this._has_showIdentity; - } - //-- boolean hasShowIdentity() - - /** - * Method hasShowQuality - * - * - * - * @return boolean - */ - public boolean hasShowQuality() { - return this._has_showQuality; - } - //-- boolean hasShowQuality() - - /** - * Method hasShowSequenceFeatures - * - * - * - * @return boolean - */ - public boolean hasShowSequenceFeatures() { - return this._has_showSequenceFeatures; - } - //-- boolean hasShowSequenceFeatures() - - /** - * Method hasShowText - * - * - * - * @return boolean - */ - public boolean hasShowText() { - return this._has_showText; - } - //-- boolean hasShowText() - - /** - * Method hasStartRes - * - * - * - * @return boolean - */ - public boolean hasStartRes() { - return this._has_startRes; - } - //-- boolean hasStartRes() - - /** - * Method hasStartSeq - * - * - * - * @return boolean - */ - public boolean hasStartSeq() { - return this._has_startSeq; - } - //-- boolean hasStartSeq() - - /** - * Method hasWidth - * - * - * - * @return boolean - */ - public boolean hasWidth() { - return this._has_width; - } - //-- boolean hasWidth() - - /** - * Method hasWrapAlignment - * - * - * - * @return boolean - */ - public boolean hasWrapAlignment() { - return this._has_wrapAlignment; - } - //-- boolean hasWrapAlignment() - - /** - * Method hasXpos - * - * - * - * @return boolean - */ - public boolean hasXpos() { - return this._has_xpos; - } - //-- boolean hasXpos() - - /** - * Method hasYpos - * - * - * - * @return boolean - */ - public boolean hasYpos() { - return this._has_ypos; - } - //-- boolean hasYpos() - - /** - * Method isValid - * - * - * - * @return boolean - */ - public boolean isValid() { - try { - validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { - return false; - } - - return true; - } - //-- boolean isValid() - - /** - * Method marshal - * - * - * - * @param out - */ - public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, out); - } - //-- void marshal(java.io.Writer) - - /** - * Method marshal - * - * - * - * @param handler - */ - public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, handler); - } - //-- void marshal(org.xml.sax.ContentHandler) - - /** - * Sets the value of field 'bgColour'. - * - * @param bgColour the value of field 'bgColour'. - */ - public void setBgColour(java.lang.String bgColour) { - this._bgColour = bgColour; - } - //-- void setBgColour(java.lang.String) - - /** - * Sets the value of field 'consThreshold'. - * - * @param consThreshold the value of field 'consThreshold'. - */ - public void setConsThreshold(int consThreshold) { - this._consThreshold = consThreshold; - this._has_consThreshold = true; - } - //-- void setConsThreshold(int) - - /** - * Sets the value of field 'conservationSelected'. - * - * @param conservationSelected the value of field - * 'conservationSelected'. - */ - public void setConservationSelected(boolean conservationSelected) { - this._conservationSelected = conservationSelected; - this._has_conservationSelected = true; - } - //-- void setConservationSelected(boolean) - - /** - * Sets the value of field 'fontName'. - * - * @param fontName the value of field 'fontName'. - */ - public void setFontName(java.lang.String fontName) { - this._fontName = fontName; - } - //-- void setFontName(java.lang.String) - - /** - * Sets the value of field 'fontSize'. - * - * @param fontSize the value of field 'fontSize'. - */ - public void setFontSize(int fontSize) { - this._fontSize = fontSize; - this._has_fontSize = true; - } - //-- void setFontSize(int) - - /** - * Sets the value of field 'fontStyle'. - * - * @param fontStyle the value of field 'fontStyle'. - */ - public void setFontStyle(int fontStyle) { - this._fontStyle = fontStyle; - this._has_fontStyle = true; - } - //-- void setFontStyle(int) - - /** - * Sets the value of field 'height'. - * - * @param height the value of field 'height'. - */ - public void setHeight(int height) { - this._height = height; - this._has_height = true; - } - //-- void setHeight(int) - - /** - * Sets the value of field 'pidSelected'. - * - * @param pidSelected the value of field 'pidSelected'. - */ - public void setPidSelected(boolean pidSelected) { - this._pidSelected = pidSelected; - this._has_pidSelected = true; - } - //-- void setPidSelected(boolean) - - /** - * Sets the value of field 'pidThreshold'. - * - * @param pidThreshold the value of field 'pidThreshold'. - */ - public void setPidThreshold(int pidThreshold) { - this._pidThreshold = pidThreshold; - this._has_pidThreshold = true; - } - //-- void setPidThreshold(int) - - /** - * Sets the value of field 'renderGaps'. - * - * @param renderGaps the value of field 'renderGaps'. - */ - public void setRenderGaps(boolean renderGaps) { - this._renderGaps = renderGaps; - this._has_renderGaps = true; - } - //-- void setRenderGaps(boolean) - - /** - * Sets the value of field 'showAnnotation'. - * - * @param showAnnotation the value of field 'showAnnotation'. - */ - public void setShowAnnotation(boolean showAnnotation) { - this._showAnnotation = showAnnotation; - this._has_showAnnotation = true; - } - //-- void setShowAnnotation(boolean) - - /** - * Sets the value of field 'showBoxes'. - * - * @param showBoxes the value of field 'showBoxes'. - */ - public void setShowBoxes(boolean showBoxes) { - this._showBoxes = showBoxes; - this._has_showBoxes = true; - } - //-- void setShowBoxes(boolean) - - /** - * Sets the value of field 'showColourText'. - * - * @param showColourText the value of field 'showColourText'. - */ - public void setShowColourText(boolean showColourText) { - this._showColourText = showColourText; - this._has_showColourText = true; - } - //-- void setShowColourText(boolean) - - /** - * Sets the value of field 'showConservation'. - * - * @param showConservation the value of field 'showConservation' - */ - public void setShowConservation(boolean showConservation) { - this._showConservation = showConservation; - this._has_showConservation = true; - } - //-- void setShowConservation(boolean) - - /** - * Sets the value of field 'showFullId'. - * - * @param showFullId the value of field 'showFullId'. - */ - public void setShowFullId(boolean showFullId) { - this._showFullId = showFullId; - this._has_showFullId = true; - } - //-- void setShowFullId(boolean) - - /** - * Sets the value of field 'showIdentity'. - * - * @param showIdentity the value of field 'showIdentity'. - */ - public void setShowIdentity(boolean showIdentity) { - this._showIdentity = showIdentity; - this._has_showIdentity = true; - } - //-- void setShowIdentity(boolean) - - /** - * Sets the value of field 'showQuality'. - * - * @param showQuality the value of field 'showQuality'. - */ - public void setShowQuality(boolean showQuality) { - this._showQuality = showQuality; - this._has_showQuality = true; - } - //-- void setShowQuality(boolean) - - /** - * Sets the value of field 'showSequenceFeatures'. - * - * @param showSequenceFeatures the value of field - * 'showSequenceFeatures'. - */ - public void setShowSequenceFeatures(boolean showSequenceFeatures) { - this._showSequenceFeatures = showSequenceFeatures; - this._has_showSequenceFeatures = true; - } - //-- void setShowSequenceFeatures(boolean) - - /** - * Sets the value of field 'showText'. - * - * @param showText the value of field 'showText'. - */ - public void setShowText(boolean showText) { - this._showText = showText; - this._has_showText = true; - } - //-- void setShowText(boolean) - - /** - * Sets the value of field 'startRes'. - * - * @param startRes the value of field 'startRes'. - */ - public void setStartRes(int startRes) { - this._startRes = startRes; - this._has_startRes = true; - } - //-- void setStartRes(int) - - /** - * Sets the value of field 'startSeq'. - * - * @param startSeq the value of field 'startSeq'. - */ - public void setStartSeq(int startSeq) { - this._startSeq = startSeq; - this._has_startSeq = true; - } - //-- void setStartSeq(int) - - /** - * Sets the value of field 'title'. - * - * @param title the value of field 'title'. - */ - public void setTitle(java.lang.String title) { - this._title = title; - } - //-- void setTitle(java.lang.String) - - /** - * Sets the value of field 'width'. - * - * @param width the value of field 'width'. - */ - public void setWidth(int width) { - this._width = width; - this._has_width = true; - } - //-- void setWidth(int) - - /** - * Sets the value of field 'wrapAlignment'. - * - * @param wrapAlignment the value of field 'wrapAlignment'. - */ - public void setWrapAlignment(boolean wrapAlignment) { - this._wrapAlignment = wrapAlignment; - this._has_wrapAlignment = true; - } - //-- void setWrapAlignment(boolean) - - /** - * Sets the value of field 'xpos'. - * - * @param xpos the value of field 'xpos'. - */ - public void setXpos(int xpos) { - this._xpos = xpos; - this._has_xpos = true; - } - //-- void setXpos(int) - - /** - * Sets the value of field 'ypos'. - * - * @param ypos the value of field 'ypos'. - */ - public void setYpos(int ypos) { - this._ypos = ypos; - this._has_ypos = true; - } - //-- void setYpos(int) - - /** - * Method unmarshal - * - * - * - * @param reader - * @return Object - */ - public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException { - return (jalview.binding.Viewport) Unmarshaller.unmarshal(jalview.binding.Viewport.class, - reader); - } - //-- java.lang.Object unmarshal(java.io.Reader) - - /** - * Method validate - * - */ - public void validate() throws org.exolab.castor.xml.ValidationException { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); - } - //-- void validate() }