X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FViewport.java;h=097ba71498e02fa4ba784169ab1d1e4c3b446a9f;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=07622b36a63923c809dfb08ad4e34c740121598c;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git diff --git a/src/jalview/binding/Viewport.java b/src/jalview/binding/Viewport.java old mode 100755 new mode 100644 index 07622b3..097ba71 --- a/src/jalview/binding/Viewport.java +++ b/src/jalview/binding/Viewport.java @@ -1,1419 +1,1449 @@ -/* - * This class was automatically generated with - * Castor 0.9.6, using an XML - * Schema. - * $Id$ - */ - -package jalview.binding; - -//---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ - -import org.exolab.castor.xml.*; - -/** - * Class Viewport. - * - * @version $Revision$ $Date$ - */ -public class Viewport - implements java.io.Serializable -{ - - //--------------------------/ - //- Class/Member Variables -/ - //--------------------------/ - - /** - * Field _conservationSelected - */ - private boolean _conservationSelected; - - /** - * keeps track of state for field: _conservationSelected - */ - private boolean _has_conservationSelected; - - /** - * Field _pidSelected - */ - private boolean _pidSelected; - - /** - * keeps track of state for field: _pidSelected - */ - private boolean _has_pidSelected; - - /** - * Field _bgColour - */ - private java.lang.String _bgColour; - - /** - * Field _consThreshold - */ - private int _consThreshold; - - /** - * keeps track of state for field: _consThreshold - */ - private boolean _has_consThreshold; - - /** - * Field _pidThreshold - */ - private int _pidThreshold; - - /** - * keeps track of state for field: _pidThreshold - */ - private boolean _has_pidThreshold; - - /** - * Field _title - */ - private java.lang.String _title; - - /** - * Field _showFullId - */ - private boolean _showFullId; - - /** - * keeps track of state for field: _showFullId - */ - private boolean _has_showFullId; - - /** - * Field _showText - */ - private boolean _showText; - - /** - * keeps track of state for field: _showText - */ - private boolean _has_showText; - - /** - * Field _showColourText - */ - private boolean _showColourText; - - /** - * keeps track of state for field: _showColourText - */ - private boolean _has_showColourText; - - /** - * Field _showBoxes - */ - private boolean _showBoxes; - - /** - * keeps track of state for field: _showBoxes - */ - private boolean _has_showBoxes; - - /** - * Field _wrapAlignment - */ - private boolean _wrapAlignment; - - /** - * keeps track of state for field: _wrapAlignment - */ - private boolean _has_wrapAlignment; - - /** - * Field _renderGaps - */ - private boolean _renderGaps; - - /** - * keeps track of state for field: _renderGaps - */ - private boolean _has_renderGaps; - - /** - * Field _showSequenceFeatures - */ - private boolean _showSequenceFeatures; - - /** - * keeps track of state for field: _showSequenceFeatures - */ - private boolean _has_showSequenceFeatures; - - /** - * Field _showAnnotation - */ - private boolean _showAnnotation; - - /** - * keeps track of state for field: _showAnnotation - */ - private boolean _has_showAnnotation; - - /** - * Field _showConservation - */ - private boolean _showConservation; - - /** - * keeps track of state for field: _showConservation - */ - private boolean _has_showConservation; - - /** - * Field _showQuality - */ - private boolean _showQuality; - - /** - * keeps track of state for field: _showQuality - */ - private boolean _has_showQuality; - - /** - * Field _showIdentity - */ - private boolean _showIdentity; - - /** - * keeps track of state for field: _showIdentity - */ - private boolean _has_showIdentity; - - /** - * Field _xpos - */ - private int _xpos; - - /** - * keeps track of state for field: _xpos - */ - private boolean _has_xpos; - - /** - * Field _ypos - */ - private int _ypos; - - /** - * keeps track of state for field: _ypos - */ - private boolean _has_ypos; - - /** - * Field _width - */ - private int _width; - - /** - * keeps track of state for field: _width - */ - private boolean _has_width; - - /** - * Field _height - */ - private int _height; - - /** - * keeps track of state for field: _height - */ - private boolean _has_height; - - /** - * Field _startRes - */ - private int _startRes; - - /** - * keeps track of state for field: _startRes - */ - private boolean _has_startRes; - - /** - * Field _startSeq - */ - private int _startSeq; - - /** - * keeps track of state for field: _startSeq - */ - private boolean _has_startSeq; - - /** - * Field _fontName - */ - private java.lang.String _fontName; - - /** - * Field _fontSize - */ - private int _fontSize; - - /** - * keeps track of state for field: _fontSize - */ - private boolean _has_fontSize; - - /** - * Field _fontStyle - */ - private int _fontStyle; - - /** - * keeps track of state for field: _fontStyle - */ - private boolean _has_fontStyle; - - //----------------/ - //- Constructors -/ - //----------------/ - - public Viewport() - { - super(); - } //-- jalview.binding.Viewport() - - //-----------/ - //- Methods -/ - //-----------/ - - /** - * Method deleteConsThreshold - * - */ - public void deleteConsThreshold() - { - this._has_consThreshold = false; - } //-- void deleteConsThreshold() - - /** - * Method deleteConservationSelected - * - */ - public void deleteConservationSelected() - { - this._has_conservationSelected = false; - } //-- void deleteConservationSelected() - - /** - * Method deleteFontSize - * - */ - public void deleteFontSize() - { - this._has_fontSize = false; - } //-- void deleteFontSize() - - /** - * Method deleteFontStyle - * - */ - public void deleteFontStyle() - { - this._has_fontStyle = false; - } //-- void deleteFontStyle() - - /** - * Method deleteHeight - * - */ - public void deleteHeight() - { - this._has_height = false; - } //-- void deleteHeight() - - /** - * Method deletePidSelected - * - */ - public void deletePidSelected() - { - this._has_pidSelected = false; - } //-- void deletePidSelected() - - /** - * Method deletePidThreshold - * - */ - public void deletePidThreshold() - { - this._has_pidThreshold = false; - } //-- void deletePidThreshold() - - /** - * Method deleteRenderGaps - * - */ - public void deleteRenderGaps() - { - this._has_renderGaps = false; - } //-- void deleteRenderGaps() - - /** - * Method deleteShowAnnotation - * - */ - public void deleteShowAnnotation() - { - this._has_showAnnotation = false; - } //-- void deleteShowAnnotation() - - /** - * Method deleteShowBoxes - * - */ - public void deleteShowBoxes() - { - this._has_showBoxes = false; - } //-- void deleteShowBoxes() - - /** - * Method deleteShowColourText - * - */ - public void deleteShowColourText() - { - this._has_showColourText = false; - } //-- void deleteShowColourText() - - /** - * Method deleteShowConservation - * - */ - public void deleteShowConservation() - { - this._has_showConservation = false; - } //-- void deleteShowConservation() - - /** - * Method deleteShowFullId - * - */ - public void deleteShowFullId() - { - this._has_showFullId = false; - } //-- void deleteShowFullId() - - /** - * Method deleteShowIdentity - * - */ - public void deleteShowIdentity() - { - this._has_showIdentity = false; - } //-- void deleteShowIdentity() - - /** - * Method deleteShowQuality - * - */ - public void deleteShowQuality() - { - this._has_showQuality = false; - } //-- void deleteShowQuality() - - /** - * Method deleteShowSequenceFeatures - * - */ - public void deleteShowSequenceFeatures() - { - this._has_showSequenceFeatures = false; - } //-- void deleteShowSequenceFeatures() - - /** - * Method deleteShowText - * - */ - public void deleteShowText() - { - this._has_showText = false; - } //-- void deleteShowText() - - /** - * Method deleteStartRes - * - */ - public void deleteStartRes() - { - this._has_startRes = false; - } //-- void deleteStartRes() - - /** - * Method deleteStartSeq - * - */ - public void deleteStartSeq() - { - this._has_startSeq = false; - } //-- void deleteStartSeq() - - /** - * Method deleteWidth - * - */ - public void deleteWidth() - { - this._has_width = false; - } //-- void deleteWidth() - - /** - * Method deleteWrapAlignment - * - */ - public void deleteWrapAlignment() - { - this._has_wrapAlignment = false; - } //-- void deleteWrapAlignment() - - /** - * Method deleteXpos - * - */ - public void deleteXpos() - { - this._has_xpos = false; - } //-- void deleteXpos() - - /** - * Method deleteYpos - * - */ - public void deleteYpos() - { - this._has_ypos = false; - } //-- void deleteYpos() - - /** - * Returns the value of field 'bgColour'. - * - * @return String - * @return the value of field 'bgColour'. - */ - public java.lang.String getBgColour() - { - return this._bgColour; - } //-- java.lang.String getBgColour() - - /** - * Returns the value of field 'consThreshold'. - * - * @return int - * @return the value of field 'consThreshold'. - */ - public int getConsThreshold() - { - return this._consThreshold; - } //-- int getConsThreshold() - - /** - * Returns the value of field 'conservationSelected'. - * - * @return boolean - * @return the value of field 'conservationSelected'. - */ - public boolean getConservationSelected() - { - return this._conservationSelected; - } //-- boolean getConservationSelected() - - /** - * Returns the value of field 'fontName'. - * - * @return String - * @return the value of field 'fontName'. - */ - public java.lang.String getFontName() - { - return this._fontName; - } //-- java.lang.String getFontName() - - /** - * Returns the value of field 'fontSize'. - * - * @return int - * @return the value of field 'fontSize'. - */ - public int getFontSize() - { - return this._fontSize; - } //-- int getFontSize() - - /** - * Returns the value of field 'fontStyle'. - * - * @return int - * @return the value of field 'fontStyle'. - */ - public int getFontStyle() - { - return this._fontStyle; - } //-- int getFontStyle() - - /** - * Returns the value of field 'height'. - * - * @return int - * @return the value of field 'height'. - */ - public int getHeight() - { - return this._height; - } //-- int getHeight() - - /** - * Returns the value of field 'pidSelected'. - * - * @return boolean - * @return the value of field 'pidSelected'. - */ - public boolean getPidSelected() - { - return this._pidSelected; - } //-- boolean getPidSelected() - - /** - * Returns the value of field 'pidThreshold'. - * - * @return int - * @return the value of field 'pidThreshold'. - */ - public int getPidThreshold() - { - return this._pidThreshold; - } //-- int getPidThreshold() - - /** - * Returns the value of field 'renderGaps'. - * - * @return boolean - * @return the value of field 'renderGaps'. - */ - public boolean getRenderGaps() - { - return this._renderGaps; - } //-- boolean getRenderGaps() - - /** - * Returns the value of field 'showAnnotation'. - * - * @return boolean - * @return the value of field 'showAnnotation'. - */ - public boolean getShowAnnotation() - { - return this._showAnnotation; - } //-- boolean getShowAnnotation() - - /** - * Returns the value of field 'showBoxes'. - * - * @return boolean - * @return the value of field 'showBoxes'. - */ - public boolean getShowBoxes() - { - return this._showBoxes; - } //-- boolean getShowBoxes() - - /** - * Returns the value of field 'showColourText'. - * - * @return boolean - * @return the value of field 'showColourText'. - */ - public boolean getShowColourText() - { - return this._showColourText; - } //-- boolean getShowColourText() - - /** - * Returns the value of field 'showConservation'. - * - * @return boolean - * @return the value of field 'showConservation'. - */ - public boolean getShowConservation() - { - return this._showConservation; - } //-- boolean getShowConservation() - - /** - * Returns the value of field 'showFullId'. - * - * @return boolean - * @return the value of field 'showFullId'. - */ - public boolean getShowFullId() - { - return this._showFullId; - } //-- boolean getShowFullId() - - /** - * Returns the value of field 'showIdentity'. - * - * @return boolean - * @return the value of field 'showIdentity'. - */ - public boolean getShowIdentity() - { - return this._showIdentity; - } //-- boolean getShowIdentity() - - /** - * Returns the value of field 'showQuality'. - * - * @return boolean - * @return the value of field 'showQuality'. - */ - public boolean getShowQuality() - { - return this._showQuality; - } //-- boolean getShowQuality() - - /** - * Returns the value of field 'showSequenceFeatures'. - * - * @return boolean - * @return the value of field 'showSequenceFeatures'. - */ - public boolean getShowSequenceFeatures() - { - return this._showSequenceFeatures; - } //-- boolean getShowSequenceFeatures() - - /** - * Returns the value of field 'showText'. - * - * @return boolean - * @return the value of field 'showText'. - */ - public boolean getShowText() - { - return this._showText; - } //-- boolean getShowText() - - /** - * Returns the value of field 'startRes'. - * - * @return int - * @return the value of field 'startRes'. - */ - public int getStartRes() - { - return this._startRes; - } //-- int getStartRes() - - /** - * Returns the value of field 'startSeq'. - * - * @return int - * @return the value of field 'startSeq'. - */ - public int getStartSeq() - { - return this._startSeq; - } //-- int getStartSeq() - - /** - * Returns the value of field 'title'. - * - * @return String - * @return the value of field 'title'. - */ - public java.lang.String getTitle() - { - return this._title; - } //-- java.lang.String getTitle() - - /** - * Returns the value of field 'width'. - * - * @return int - * @return the value of field 'width'. - */ - public int getWidth() - { - return this._width; - } //-- int getWidth() - - /** - * Returns the value of field 'wrapAlignment'. - * - * @return boolean - * @return the value of field 'wrapAlignment'. - */ - public boolean getWrapAlignment() - { - return this._wrapAlignment; - } //-- boolean getWrapAlignment() - - /** - * Returns the value of field 'xpos'. - * - * @return int - * @return the value of field 'xpos'. - */ - public int getXpos() - { - return this._xpos; - } //-- int getXpos() - - /** - * Returns the value of field 'ypos'. - * - * @return int - * @return the value of field 'ypos'. - */ - public int getYpos() - { - return this._ypos; - } //-- int getYpos() - - /** - * Method hasConsThreshold - * - * - * - * @return boolean - */ - public boolean hasConsThreshold() - { - return this._has_consThreshold; - } //-- boolean hasConsThreshold() - - /** - * Method hasConservationSelected - * - * - * - * @return boolean - */ - public boolean hasConservationSelected() - { - return this._has_conservationSelected; - } //-- boolean hasConservationSelected() - - /** - * Method hasFontSize - * - * - * - * @return boolean - */ - public boolean hasFontSize() - { - return this._has_fontSize; - } //-- boolean hasFontSize() - - /** - * Method hasFontStyle - * - * - * - * @return boolean - */ - public boolean hasFontStyle() - { - return this._has_fontStyle; - } //-- boolean hasFontStyle() - - /** - * Method hasHeight - * - * - * - * @return boolean - */ - public boolean hasHeight() - { - return this._has_height; - } //-- boolean hasHeight() - - /** - * Method hasPidSelected - * - * - * - * @return boolean - */ - public boolean hasPidSelected() - { - return this._has_pidSelected; - } //-- boolean hasPidSelected() - - /** - * Method hasPidThreshold - * - * - * - * @return boolean - */ - public boolean hasPidThreshold() - { - return this._has_pidThreshold; - } //-- boolean hasPidThreshold() - - /** - * Method hasRenderGaps - * - * - * - * @return boolean - */ - public boolean hasRenderGaps() - { - return this._has_renderGaps; - } //-- boolean hasRenderGaps() - - /** - * Method hasShowAnnotation - * - * - * - * @return boolean - */ - public boolean hasShowAnnotation() - { - return this._has_showAnnotation; - } //-- boolean hasShowAnnotation() - - /** - * Method hasShowBoxes - * - * - * - * @return boolean - */ - public boolean hasShowBoxes() - { - return this._has_showBoxes; - } //-- boolean hasShowBoxes() - - /** - * Method hasShowColourText - * - * - * - * @return boolean - */ - public boolean hasShowColourText() - { - return this._has_showColourText; - } //-- boolean hasShowColourText() - - /** - * Method hasShowConservation - * - * - * - * @return boolean - */ - public boolean hasShowConservation() - { - return this._has_showConservation; - } //-- boolean hasShowConservation() - - /** - * Method hasShowFullId - * - * - * - * @return boolean - */ - public boolean hasShowFullId() - { - return this._has_showFullId; - } //-- boolean hasShowFullId() - - /** - * Method hasShowIdentity - * - * - * - * @return boolean - */ - public boolean hasShowIdentity() - { - return this._has_showIdentity; - } //-- boolean hasShowIdentity() - - /** - * Method hasShowQuality - * - * - * - * @return boolean - */ - public boolean hasShowQuality() - { - return this._has_showQuality; - } //-- boolean hasShowQuality() - - /** - * Method hasShowSequenceFeatures - * - * - * - * @return boolean - */ - public boolean hasShowSequenceFeatures() - { - return this._has_showSequenceFeatures; - } //-- boolean hasShowSequenceFeatures() - - /** - * Method hasShowText - * - * - * - * @return boolean - */ - public boolean hasShowText() - { - return this._has_showText; - } //-- boolean hasShowText() - - /** - * Method hasStartRes - * - * - * - * @return boolean - */ - public boolean hasStartRes() - { - return this._has_startRes; - } //-- boolean hasStartRes() - - /** - * Method hasStartSeq - * - * - * - * @return boolean - */ - public boolean hasStartSeq() - { - return this._has_startSeq; - } //-- boolean hasStartSeq() - - /** - * Method hasWidth - * - * - * - * @return boolean - */ - public boolean hasWidth() - { - return this._has_width; - } //-- boolean hasWidth() - - /** - * Method hasWrapAlignment - * - * - * - * @return boolean - */ - public boolean hasWrapAlignment() - { - return this._has_wrapAlignment; - } //-- boolean hasWrapAlignment() - - /** - * Method hasXpos - * - * - * - * @return boolean - */ - public boolean hasXpos() - { - return this._has_xpos; - } //-- boolean hasXpos() - - /** - * Method hasYpos - * - * - * - * @return boolean - */ - public boolean hasYpos() - { - return this._has_ypos; - } //-- boolean hasYpos() - - /** - * Method isValid - * - * - * - * @return boolean - */ - public boolean isValid() - { - try - { - validate(); - } - catch (org.exolab.castor.xml.ValidationException vex) - { - return false; - } - return true; - } //-- boolean isValid() - - /** - * Method marshal - * - * - * - * @param out - */ - public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - - Marshaller.marshal(this, out); - } //-- void marshal(java.io.Writer) - - /** - * Method marshal - * - * - * - * @param handler - */ - public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - - Marshaller.marshal(this, handler); - } //-- void marshal(org.xml.sax.ContentHandler) - - /** - * Sets the value of field 'bgColour'. - * - * @param bgColour the value of field 'bgColour'. - */ - public void setBgColour(java.lang.String bgColour) - { - this._bgColour = bgColour; - } //-- void setBgColour(java.lang.String) - - /** - * Sets the value of field 'consThreshold'. - * - * @param consThreshold the value of field 'consThreshold'. - */ - public void setConsThreshold(int consThreshold) - { - this._consThreshold = consThreshold; - this._has_consThreshold = true; - } //-- void setConsThreshold(int) - - /** - * Sets the value of field 'conservationSelected'. - * - * @param conservationSelected the value of field - * 'conservationSelected'. - */ - public void setConservationSelected(boolean conservationSelected) - { - this._conservationSelected = conservationSelected; - this._has_conservationSelected = true; - } //-- void setConservationSelected(boolean) - - /** - * Sets the value of field 'fontName'. - * - * @param fontName the value of field 'fontName'. - */ - public void setFontName(java.lang.String fontName) - { - this._fontName = fontName; - } //-- void setFontName(java.lang.String) - - /** - * Sets the value of field 'fontSize'. - * - * @param fontSize the value of field 'fontSize'. - */ - public void setFontSize(int fontSize) - { - this._fontSize = fontSize; - this._has_fontSize = true; - } //-- void setFontSize(int) - - /** - * Sets the value of field 'fontStyle'. - * - * @param fontStyle the value of field 'fontStyle'. - */ - public void setFontStyle(int fontStyle) - { - this._fontStyle = fontStyle; - this._has_fontStyle = true; - } //-- void setFontStyle(int) - - /** - * Sets the value of field 'height'. - * - * @param height the value of field 'height'. - */ - public void setHeight(int height) - { - this._height = height; - this._has_height = true; - } //-- void setHeight(int) - - /** - * Sets the value of field 'pidSelected'. - * - * @param pidSelected the value of field 'pidSelected'. - */ - public void setPidSelected(boolean pidSelected) - { - this._pidSelected = pidSelected; - this._has_pidSelected = true; - } //-- void setPidSelected(boolean) - - /** - * Sets the value of field 'pidThreshold'. - * - * @param pidThreshold the value of field 'pidThreshold'. - */ - public void setPidThreshold(int pidThreshold) - { - this._pidThreshold = pidThreshold; - this._has_pidThreshold = true; - } //-- void setPidThreshold(int) - - /** - * Sets the value of field 'renderGaps'. - * - * @param renderGaps the value of field 'renderGaps'. - */ - public void setRenderGaps(boolean renderGaps) - { - this._renderGaps = renderGaps; - this._has_renderGaps = true; - } //-- void setRenderGaps(boolean) - - /** - * Sets the value of field 'showAnnotation'. - * - * @param showAnnotation the value of field 'showAnnotation'. - */ - public void setShowAnnotation(boolean showAnnotation) - { - this._showAnnotation = showAnnotation; - this._has_showAnnotation = true; - } //-- void setShowAnnotation(boolean) - - /** - * Sets the value of field 'showBoxes'. - * - * @param showBoxes the value of field 'showBoxes'. - */ - public void setShowBoxes(boolean showBoxes) - { - this._showBoxes = showBoxes; - this._has_showBoxes = true; - } //-- void setShowBoxes(boolean) - - /** - * Sets the value of field 'showColourText'. - * - * @param showColourText the value of field 'showColourText'. - */ - public void setShowColourText(boolean showColourText) - { - this._showColourText = showColourText; - this._has_showColourText = true; - } //-- void setShowColourText(boolean) - - /** - * Sets the value of field 'showConservation'. - * - * @param showConservation the value of field 'showConservation' - */ - public void setShowConservation(boolean showConservation) - { - this._showConservation = showConservation; - this._has_showConservation = true; - } //-- void setShowConservation(boolean) - - /** - * Sets the value of field 'showFullId'. - * - * @param showFullId the value of field 'showFullId'. - */ - public void setShowFullId(boolean showFullId) - { - this._showFullId = showFullId; - this._has_showFullId = true; - } //-- void setShowFullId(boolean) - - /** - * Sets the value of field 'showIdentity'. - * - * @param showIdentity the value of field 'showIdentity'. - */ - public void setShowIdentity(boolean showIdentity) - { - this._showIdentity = showIdentity; - this._has_showIdentity = true; - } //-- void setShowIdentity(boolean) - - /** - * Sets the value of field 'showQuality'. - * - * @param showQuality the value of field 'showQuality'. - */ - public void setShowQuality(boolean showQuality) - { - this._showQuality = showQuality; - this._has_showQuality = true; - } //-- void setShowQuality(boolean) - - /** - * Sets the value of field 'showSequenceFeatures'. - * - * @param showSequenceFeatures the value of field - * 'showSequenceFeatures'. - */ - public void setShowSequenceFeatures(boolean showSequenceFeatures) - { - this._showSequenceFeatures = showSequenceFeatures; - this._has_showSequenceFeatures = true; - } //-- void setShowSequenceFeatures(boolean) - - /** - * Sets the value of field 'showText'. - * - * @param showText the value of field 'showText'. - */ - public void setShowText(boolean showText) - { - this._showText = showText; - this._has_showText = true; - } //-- void setShowText(boolean) - - /** - * Sets the value of field 'startRes'. - * - * @param startRes the value of field 'startRes'. - */ - public void setStartRes(int startRes) - { - this._startRes = startRes; - this._has_startRes = true; - } //-- void setStartRes(int) - - /** - * Sets the value of field 'startSeq'. - * - * @param startSeq the value of field 'startSeq'. - */ - public void setStartSeq(int startSeq) - { - this._startSeq = startSeq; - this._has_startSeq = true; - } //-- void setStartSeq(int) - - /** - * Sets the value of field 'title'. - * - * @param title the value of field 'title'. - */ - public void setTitle(java.lang.String title) - { - this._title = title; - } //-- void setTitle(java.lang.String) - - /** - * Sets the value of field 'width'. - * - * @param width the value of field 'width'. - */ - public void setWidth(int width) - { - this._width = width; - this._has_width = true; - } //-- void setWidth(int) - - /** - * Sets the value of field 'wrapAlignment'. - * - * @param wrapAlignment the value of field 'wrapAlignment'. - */ - public void setWrapAlignment(boolean wrapAlignment) - { - this._wrapAlignment = wrapAlignment; - this._has_wrapAlignment = true; - } //-- void setWrapAlignment(boolean) - - /** - * Sets the value of field 'xpos'. - * - * @param xpos the value of field 'xpos'. - */ - public void setXpos(int xpos) - { - this._xpos = xpos; - this._has_xpos = true; - } //-- void setXpos(int) - - /** - * Sets the value of field 'ypos'. - * - * @param ypos the value of field 'ypos'. - */ - public void setYpos(int ypos) - { - this._ypos = ypos; - this._has_ypos = true; - } //-- void setYpos(int) - - /** - * Method unmarshal - * - * - * - * @param reader - * @return Object - */ - public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - return (jalview.binding.Viewport) Unmarshaller.unmarshal(jalview.binding. - Viewport.class, reader); - } //-- java.lang.Object unmarshal(java.io.Reader) - - /** - * Method validate - * - */ - public void validate() - throws org.exolab.castor.xml.ValidationException - { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml. - Validator(); - validator.validate(this); - } //-- void validate() - -} +/******************************************************************************* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + *******************************************************************************/ +/* + * This class was automatically generated with + * Castor 1.1, using an XML + * Schema. + * $Id$ + */ + +package jalview.binding; + + //---------------------------------/ + //- Imported classes and packages -/ +//---------------------------------/ + +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; + +/** + * Class Viewport. + * + * @version $Revision$ $Date$ + */ +public class Viewport implements java.io.Serializable { + + + //--------------------------/ + //- Class/Member Variables -/ + //--------------------------/ + + /** + * Field _conservationSelected. + */ + private boolean _conservationSelected; + + /** + * keeps track of state for field: _conservationSelected + */ + private boolean _has_conservationSelected; + + /** + * Field _pidSelected. + */ + private boolean _pidSelected; + + /** + * keeps track of state for field: _pidSelected + */ + private boolean _has_pidSelected; + + /** + * Field _bgColour. + */ + private java.lang.String _bgColour; + + /** + * Field _consThreshold. + */ + private int _consThreshold; + + /** + * keeps track of state for field: _consThreshold + */ + private boolean _has_consThreshold; + + /** + * Field _pidThreshold. + */ + private int _pidThreshold; + + /** + * keeps track of state for field: _pidThreshold + */ + private boolean _has_pidThreshold; + + /** + * Field _title. + */ + private java.lang.String _title; + + /** + * Field _showFullId. + */ + private boolean _showFullId; + + /** + * keeps track of state for field: _showFullId + */ + private boolean _has_showFullId; + + /** + * Field _showText. + */ + private boolean _showText; + + /** + * keeps track of state for field: _showText + */ + private boolean _has_showText; + + /** + * Field _showColourText. + */ + private boolean _showColourText; + + /** + * keeps track of state for field: _showColourText + */ + private boolean _has_showColourText; + + /** + * Field _showBoxes. + */ + private boolean _showBoxes; + + /** + * keeps track of state for field: _showBoxes + */ + private boolean _has_showBoxes; + + /** + * Field _wrapAlignment. + */ + private boolean _wrapAlignment; + + /** + * keeps track of state for field: _wrapAlignment + */ + private boolean _has_wrapAlignment; + + /** + * Field _renderGaps. + */ + private boolean _renderGaps; + + /** + * keeps track of state for field: _renderGaps + */ + private boolean _has_renderGaps; + + /** + * Field _showSequenceFeatures. + */ + private boolean _showSequenceFeatures; + + /** + * keeps track of state for field: _showSequenceFeatures + */ + private boolean _has_showSequenceFeatures; + + /** + * Field _showAnnotation. + */ + private boolean _showAnnotation; + + /** + * keeps track of state for field: _showAnnotation + */ + private boolean _has_showAnnotation; + + /** + * Field _showConservation. + */ + private boolean _showConservation; + + /** + * keeps track of state for field: _showConservation + */ + private boolean _has_showConservation; + + /** + * Field _showQuality. + */ + private boolean _showQuality; + + /** + * keeps track of state for field: _showQuality + */ + private boolean _has_showQuality; + + /** + * Field _showIdentity. + */ + private boolean _showIdentity; + + /** + * keeps track of state for field: _showIdentity + */ + private boolean _has_showIdentity; + + /** + * Field _xpos. + */ + private int _xpos; + + /** + * keeps track of state for field: _xpos + */ + private boolean _has_xpos; + + /** + * Field _ypos. + */ + private int _ypos; + + /** + * keeps track of state for field: _ypos + */ + private boolean _has_ypos; + + /** + * Field _width. + */ + private int _width; + + /** + * keeps track of state for field: _width + */ + private boolean _has_width; + + /** + * Field _height. + */ + private int _height; + + /** + * keeps track of state for field: _height + */ + private boolean _has_height; + + /** + * Field _startRes. + */ + private int _startRes; + + /** + * keeps track of state for field: _startRes + */ + private boolean _has_startRes; + + /** + * Field _startSeq. + */ + private int _startSeq; + + /** + * keeps track of state for field: _startSeq + */ + private boolean _has_startSeq; + + /** + * Field _fontName. + */ + private java.lang.String _fontName; + + /** + * Field _fontSize. + */ + private int _fontSize; + + /** + * keeps track of state for field: _fontSize + */ + private boolean _has_fontSize; + + /** + * Field _fontStyle. + */ + private int _fontStyle; + + /** + * keeps track of state for field: _fontStyle + */ + private boolean _has_fontStyle; + + + //----------------/ + //- Constructors -/ + //----------------/ + + public Viewport() { + super(); + } + + + //-----------/ + //- Methods -/ + //-----------/ + + /** + */ + public void deleteConsThreshold( + ) { + this._has_consThreshold= false; + } + + /** + */ + public void deleteConservationSelected( + ) { + this._has_conservationSelected= false; + } + + /** + */ + public void deleteFontSize( + ) { + this._has_fontSize= false; + } + + /** + */ + public void deleteFontStyle( + ) { + this._has_fontStyle= false; + } + + /** + */ + public void deleteHeight( + ) { + this._has_height= false; + } + + /** + */ + public void deletePidSelected( + ) { + this._has_pidSelected= false; + } + + /** + */ + public void deletePidThreshold( + ) { + this._has_pidThreshold= false; + } + + /** + */ + public void deleteRenderGaps( + ) { + this._has_renderGaps= false; + } + + /** + */ + public void deleteShowAnnotation( + ) { + this._has_showAnnotation= false; + } + + /** + */ + public void deleteShowBoxes( + ) { + this._has_showBoxes= false; + } + + /** + */ + public void deleteShowColourText( + ) { + this._has_showColourText= false; + } + + /** + */ + public void deleteShowConservation( + ) { + this._has_showConservation= false; + } + + /** + */ + public void deleteShowFullId( + ) { + this._has_showFullId= false; + } + + /** + */ + public void deleteShowIdentity( + ) { + this._has_showIdentity= false; + } + + /** + */ + public void deleteShowQuality( + ) { + this._has_showQuality= false; + } + + /** + */ + public void deleteShowSequenceFeatures( + ) { + this._has_showSequenceFeatures= false; + } + + /** + */ + public void deleteShowText( + ) { + this._has_showText= false; + } + + /** + */ + public void deleteStartRes( + ) { + this._has_startRes= false; + } + + /** + */ + public void deleteStartSeq( + ) { + this._has_startSeq= false; + } + + /** + */ + public void deleteWidth( + ) { + this._has_width= false; + } + + /** + */ + public void deleteWrapAlignment( + ) { + this._has_wrapAlignment= false; + } + + /** + */ + public void deleteXpos( + ) { + this._has_xpos= false; + } + + /** + */ + public void deleteYpos( + ) { + this._has_ypos= false; + } + + /** + * Returns the value of field 'bgColour'. + * + * @return the value of field 'BgColour'. + */ + public java.lang.String getBgColour( + ) { + return this._bgColour; + } + + /** + * Returns the value of field 'consThreshold'. + * + * @return the value of field 'ConsThreshold'. + */ + public int getConsThreshold( + ) { + return this._consThreshold; + } + + /** + * Returns the value of field 'conservationSelected'. + * + * @return the value of field 'ConservationSelected'. + */ + public boolean getConservationSelected( + ) { + return this._conservationSelected; + } + + /** + * Returns the value of field 'fontName'. + * + * @return the value of field 'FontName'. + */ + public java.lang.String getFontName( + ) { + return this._fontName; + } + + /** + * Returns the value of field 'fontSize'. + * + * @return the value of field 'FontSize'. + */ + public int getFontSize( + ) { + return this._fontSize; + } + + /** + * Returns the value of field 'fontStyle'. + * + * @return the value of field 'FontStyle'. + */ + public int getFontStyle( + ) { + return this._fontStyle; + } + + /** + * Returns the value of field 'height'. + * + * @return the value of field 'Height'. + */ + public int getHeight( + ) { + return this._height; + } + + /** + * Returns the value of field 'pidSelected'. + * + * @return the value of field 'PidSelected'. + */ + public boolean getPidSelected( + ) { + return this._pidSelected; + } + + /** + * Returns the value of field 'pidThreshold'. + * + * @return the value of field 'PidThreshold'. + */ + public int getPidThreshold( + ) { + return this._pidThreshold; + } + + /** + * Returns the value of field 'renderGaps'. + * + * @return the value of field 'RenderGaps'. + */ + public boolean getRenderGaps( + ) { + return this._renderGaps; + } + + /** + * Returns the value of field 'showAnnotation'. + * + * @return the value of field 'ShowAnnotation'. + */ + public boolean getShowAnnotation( + ) { + return this._showAnnotation; + } + + /** + * Returns the value of field 'showBoxes'. + * + * @return the value of field 'ShowBoxes'. + */ + public boolean getShowBoxes( + ) { + return this._showBoxes; + } + + /** + * Returns the value of field 'showColourText'. + * + * @return the value of field 'ShowColourText'. + */ + public boolean getShowColourText( + ) { + return this._showColourText; + } + + /** + * Returns the value of field 'showConservation'. + * + * @return the value of field 'ShowConservation'. + */ + public boolean getShowConservation( + ) { + return this._showConservation; + } + + /** + * Returns the value of field 'showFullId'. + * + * @return the value of field 'ShowFullId'. + */ + public boolean getShowFullId( + ) { + return this._showFullId; + } + + /** + * Returns the value of field 'showIdentity'. + * + * @return the value of field 'ShowIdentity'. + */ + public boolean getShowIdentity( + ) { + return this._showIdentity; + } + + /** + * Returns the value of field 'showQuality'. + * + * @return the value of field 'ShowQuality'. + */ + public boolean getShowQuality( + ) { + return this._showQuality; + } + + /** + * Returns the value of field 'showSequenceFeatures'. + * + * @return the value of field 'ShowSequenceFeatures'. + */ + public boolean getShowSequenceFeatures( + ) { + return this._showSequenceFeatures; + } + + /** + * Returns the value of field 'showText'. + * + * @return the value of field 'ShowText'. + */ + public boolean getShowText( + ) { + return this._showText; + } + + /** + * Returns the value of field 'startRes'. + * + * @return the value of field 'StartRes'. + */ + public int getStartRes( + ) { + return this._startRes; + } + + /** + * Returns the value of field 'startSeq'. + * + * @return the value of field 'StartSeq'. + */ + public int getStartSeq( + ) { + return this._startSeq; + } + + /** + * Returns the value of field 'title'. + * + * @return the value of field 'Title'. + */ + public java.lang.String getTitle( + ) { + return this._title; + } + + /** + * Returns the value of field 'width'. + * + * @return the value of field 'Width'. + */ + public int getWidth( + ) { + return this._width; + } + + /** + * Returns the value of field 'wrapAlignment'. + * + * @return the value of field 'WrapAlignment'. + */ + public boolean getWrapAlignment( + ) { + return this._wrapAlignment; + } + + /** + * Returns the value of field 'xpos'. + * + * @return the value of field 'Xpos'. + */ + public int getXpos( + ) { + return this._xpos; + } + + /** + * Returns the value of field 'ypos'. + * + * @return the value of field 'Ypos'. + */ + public int getYpos( + ) { + return this._ypos; + } + + /** + * Method hasConsThreshold. + * + * @return true if at least one ConsThreshold has been added + */ + public boolean hasConsThreshold( + ) { + return this._has_consThreshold; + } + + /** + * Method hasConservationSelected. + * + * @return true if at least one ConservationSelected has been + * added + */ + public boolean hasConservationSelected( + ) { + return this._has_conservationSelected; + } + + /** + * Method hasFontSize. + * + * @return true if at least one FontSize has been added + */ + public boolean hasFontSize( + ) { + return this._has_fontSize; + } + + /** + * Method hasFontStyle. + * + * @return true if at least one FontStyle has been added + */ + public boolean hasFontStyle( + ) { + return this._has_fontStyle; + } + + /** + * Method hasHeight. + * + * @return true if at least one Height has been added + */ + public boolean hasHeight( + ) { + return this._has_height; + } + + /** + * Method hasPidSelected. + * + * @return true if at least one PidSelected has been added + */ + public boolean hasPidSelected( + ) { + return this._has_pidSelected; + } + + /** + * Method hasPidThreshold. + * + * @return true if at least one PidThreshold has been added + */ + public boolean hasPidThreshold( + ) { + return this._has_pidThreshold; + } + + /** + * Method hasRenderGaps. + * + * @return true if at least one RenderGaps has been added + */ + public boolean hasRenderGaps( + ) { + return this._has_renderGaps; + } + + /** + * Method hasShowAnnotation. + * + * @return true if at least one ShowAnnotation has been added + */ + public boolean hasShowAnnotation( + ) { + return this._has_showAnnotation; + } + + /** + * Method hasShowBoxes. + * + * @return true if at least one ShowBoxes has been added + */ + public boolean hasShowBoxes( + ) { + return this._has_showBoxes; + } + + /** + * Method hasShowColourText. + * + * @return true if at least one ShowColourText has been added + */ + public boolean hasShowColourText( + ) { + return this._has_showColourText; + } + + /** + * Method hasShowConservation. + * + * @return true if at least one ShowConservation has been added + */ + public boolean hasShowConservation( + ) { + return this._has_showConservation; + } + + /** + * Method hasShowFullId. + * + * @return true if at least one ShowFullId has been added + */ + public boolean hasShowFullId( + ) { + return this._has_showFullId; + } + + /** + * Method hasShowIdentity. + * + * @return true if at least one ShowIdentity has been added + */ + public boolean hasShowIdentity( + ) { + return this._has_showIdentity; + } + + /** + * Method hasShowQuality. + * + * @return true if at least one ShowQuality has been added + */ + public boolean hasShowQuality( + ) { + return this._has_showQuality; + } + + /** + * Method hasShowSequenceFeatures. + * + * @return true if at least one ShowSequenceFeatures has been + * added + */ + public boolean hasShowSequenceFeatures( + ) { + return this._has_showSequenceFeatures; + } + + /** + * Method hasShowText. + * + * @return true if at least one ShowText has been added + */ + public boolean hasShowText( + ) { + return this._has_showText; + } + + /** + * Method hasStartRes. + * + * @return true if at least one StartRes has been added + */ + public boolean hasStartRes( + ) { + return this._has_startRes; + } + + /** + * Method hasStartSeq. + * + * @return true if at least one StartSeq has been added + */ + public boolean hasStartSeq( + ) { + return this._has_startSeq; + } + + /** + * Method hasWidth. + * + * @return true if at least one Width has been added + */ + public boolean hasWidth( + ) { + return this._has_width; + } + + /** + * Method hasWrapAlignment. + * + * @return true if at least one WrapAlignment has been added + */ + public boolean hasWrapAlignment( + ) { + return this._has_wrapAlignment; + } + + /** + * Method hasXpos. + * + * @return true if at least one Xpos has been added + */ + public boolean hasXpos( + ) { + return this._has_xpos; + } + + /** + * Method hasYpos. + * + * @return true if at least one Ypos has been added + */ + public boolean hasYpos( + ) { + return this._has_ypos; + } + + /** + * Returns the value of field 'conservationSelected'. + * + * @return the value of field 'ConservationSelected'. + */ + public boolean isConservationSelected( + ) { + return this._conservationSelected; + } + + /** + * Returns the value of field 'pidSelected'. + * + * @return the value of field 'PidSelected'. + */ + public boolean isPidSelected( + ) { + return this._pidSelected; + } + + /** + * Returns the value of field 'renderGaps'. + * + * @return the value of field 'RenderGaps'. + */ + public boolean isRenderGaps( + ) { + return this._renderGaps; + } + + /** + * Returns the value of field 'showAnnotation'. + * + * @return the value of field 'ShowAnnotation'. + */ + public boolean isShowAnnotation( + ) { + return this._showAnnotation; + } + + /** + * Returns the value of field 'showBoxes'. + * + * @return the value of field 'ShowBoxes'. + */ + public boolean isShowBoxes( + ) { + return this._showBoxes; + } + + /** + * Returns the value of field 'showColourText'. + * + * @return the value of field 'ShowColourText'. + */ + public boolean isShowColourText( + ) { + return this._showColourText; + } + + /** + * Returns the value of field 'showConservation'. + * + * @return the value of field 'ShowConservation'. + */ + public boolean isShowConservation( + ) { + return this._showConservation; + } + + /** + * Returns the value of field 'showFullId'. + * + * @return the value of field 'ShowFullId'. + */ + public boolean isShowFullId( + ) { + return this._showFullId; + } + + /** + * Returns the value of field 'showIdentity'. + * + * @return the value of field 'ShowIdentity'. + */ + public boolean isShowIdentity( + ) { + return this._showIdentity; + } + + /** + * Returns the value of field 'showQuality'. + * + * @return the value of field 'ShowQuality'. + */ + public boolean isShowQuality( + ) { + return this._showQuality; + } + + /** + * Returns the value of field 'showSequenceFeatures'. + * + * @return the value of field 'ShowSequenceFeatures'. + */ + public boolean isShowSequenceFeatures( + ) { + return this._showSequenceFeatures; + } + + /** + * Returns the value of field 'showText'. + * + * @return the value of field 'ShowText'. + */ + public boolean isShowText( + ) { + return this._showText; + } + + /** + * Method isValid. + * + * @return true if this object is valid according to the schema + */ + public boolean isValid( + ) { + try { + validate(); + } catch (org.exolab.castor.xml.ValidationException vex) { + return false; + } + return true; + } + + /** + * Returns the value of field 'wrapAlignment'. + * + * @return the value of field 'WrapAlignment'. + */ + public boolean isWrapAlignment( + ) { + return this._wrapAlignment; + } + + /** + * + * + * @param out + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void marshal( + final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, out); + } + + /** + * + * + * @param handler + * @throws java.io.IOException if an IOException occurs during + * marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + */ + public void marshal( + final org.xml.sax.ContentHandler handler) + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, handler); + } + + /** + * Sets the value of field 'bgColour'. + * + * @param bgColour the value of field 'bgColour'. + */ + public void setBgColour( + final java.lang.String bgColour) { + this._bgColour = bgColour; + } + + /** + * Sets the value of field 'consThreshold'. + * + * @param consThreshold the value of field 'consThreshold'. + */ + public void setConsThreshold( + final int consThreshold) { + this._consThreshold = consThreshold; + this._has_consThreshold = true; + } + + /** + * Sets the value of field 'conservationSelected'. + * + * @param conservationSelected the value of field + * 'conservationSelected'. + */ + public void setConservationSelected( + final boolean conservationSelected) { + this._conservationSelected = conservationSelected; + this._has_conservationSelected = true; + } + + /** + * Sets the value of field 'fontName'. + * + * @param fontName the value of field 'fontName'. + */ + public void setFontName( + final java.lang.String fontName) { + this._fontName = fontName; + } + + /** + * Sets the value of field 'fontSize'. + * + * @param fontSize the value of field 'fontSize'. + */ + public void setFontSize( + final int fontSize) { + this._fontSize = fontSize; + this._has_fontSize = true; + } + + /** + * Sets the value of field 'fontStyle'. + * + * @param fontStyle the value of field 'fontStyle'. + */ + public void setFontStyle( + final int fontStyle) { + this._fontStyle = fontStyle; + this._has_fontStyle = true; + } + + /** + * Sets the value of field 'height'. + * + * @param height the value of field 'height'. + */ + public void setHeight( + final int height) { + this._height = height; + this._has_height = true; + } + + /** + * Sets the value of field 'pidSelected'. + * + * @param pidSelected the value of field 'pidSelected'. + */ + public void setPidSelected( + final boolean pidSelected) { + this._pidSelected = pidSelected; + this._has_pidSelected = true; + } + + /** + * Sets the value of field 'pidThreshold'. + * + * @param pidThreshold the value of field 'pidThreshold'. + */ + public void setPidThreshold( + final int pidThreshold) { + this._pidThreshold = pidThreshold; + this._has_pidThreshold = true; + } + + /** + * Sets the value of field 'renderGaps'. + * + * @param renderGaps the value of field 'renderGaps'. + */ + public void setRenderGaps( + final boolean renderGaps) { + this._renderGaps = renderGaps; + this._has_renderGaps = true; + } + + /** + * Sets the value of field 'showAnnotation'. + * + * @param showAnnotation the value of field 'showAnnotation'. + */ + public void setShowAnnotation( + final boolean showAnnotation) { + this._showAnnotation = showAnnotation; + this._has_showAnnotation = true; + } + + /** + * Sets the value of field 'showBoxes'. + * + * @param showBoxes the value of field 'showBoxes'. + */ + public void setShowBoxes( + final boolean showBoxes) { + this._showBoxes = showBoxes; + this._has_showBoxes = true; + } + + /** + * Sets the value of field 'showColourText'. + * + * @param showColourText the value of field 'showColourText'. + */ + public void setShowColourText( + final boolean showColourText) { + this._showColourText = showColourText; + this._has_showColourText = true; + } + + /** + * Sets the value of field 'showConservation'. + * + * @param showConservation the value of field 'showConservation' + */ + public void setShowConservation( + final boolean showConservation) { + this._showConservation = showConservation; + this._has_showConservation = true; + } + + /** + * Sets the value of field 'showFullId'. + * + * @param showFullId the value of field 'showFullId'. + */ + public void setShowFullId( + final boolean showFullId) { + this._showFullId = showFullId; + this._has_showFullId = true; + } + + /** + * Sets the value of field 'showIdentity'. + * + * @param showIdentity the value of field 'showIdentity'. + */ + public void setShowIdentity( + final boolean showIdentity) { + this._showIdentity = showIdentity; + this._has_showIdentity = true; + } + + /** + * Sets the value of field 'showQuality'. + * + * @param showQuality the value of field 'showQuality'. + */ + public void setShowQuality( + final boolean showQuality) { + this._showQuality = showQuality; + this._has_showQuality = true; + } + + /** + * Sets the value of field 'showSequenceFeatures'. + * + * @param showSequenceFeatures the value of field + * 'showSequenceFeatures'. + */ + public void setShowSequenceFeatures( + final boolean showSequenceFeatures) { + this._showSequenceFeatures = showSequenceFeatures; + this._has_showSequenceFeatures = true; + } + + /** + * Sets the value of field 'showText'. + * + * @param showText the value of field 'showText'. + */ + public void setShowText( + final boolean showText) { + this._showText = showText; + this._has_showText = true; + } + + /** + * Sets the value of field 'startRes'. + * + * @param startRes the value of field 'startRes'. + */ + public void setStartRes( + final int startRes) { + this._startRes = startRes; + this._has_startRes = true; + } + + /** + * Sets the value of field 'startSeq'. + * + * @param startSeq the value of field 'startSeq'. + */ + public void setStartSeq( + final int startSeq) { + this._startSeq = startSeq; + this._has_startSeq = true; + } + + /** + * Sets the value of field 'title'. + * + * @param title the value of field 'title'. + */ + public void setTitle( + final java.lang.String title) { + this._title = title; + } + + /** + * Sets the value of field 'width'. + * + * @param width the value of field 'width'. + */ + public void setWidth( + final int width) { + this._width = width; + this._has_width = true; + } + + /** + * Sets the value of field 'wrapAlignment'. + * + * @param wrapAlignment the value of field 'wrapAlignment'. + */ + public void setWrapAlignment( + final boolean wrapAlignment) { + this._wrapAlignment = wrapAlignment; + this._has_wrapAlignment = true; + } + + /** + * Sets the value of field 'xpos'. + * + * @param xpos the value of field 'xpos'. + */ + public void setXpos( + final int xpos) { + this._xpos = xpos; + this._has_xpos = true; + } + + /** + * Sets the value of field 'ypos'. + * + * @param ypos the value of field 'ypos'. + */ + public void setYpos( + final int ypos) { + this._ypos = ypos; + this._has_ypos = true; + } + + /** + * Method unmarshal. + * + * @param reader + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @return the unmarshaled jalview.binding.Viewport + */ + public static jalview.binding.Viewport unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + return (jalview.binding.Viewport) Unmarshaller.unmarshal(jalview.binding.Viewport.class, reader); + } + + /** + * + * + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void validate( + ) + throws org.exolab.castor.xml.ValidationException { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); + validator.validate(this); + } + +}