X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcommands%2FChangeCaseCommand.java;h=00d90003c3c992a90ec966b0b406a9c8e9315bd0;hb=2e699d341f8e64868e3c279f9c02af617c4e9b44;hp=49faa50ec476d2202514cdbcbe0ad97c766edb2a;hpb=0c40653e5033e68c8d87955ea9f96879c8114b62;p=jalview.git

diff --git a/src/jalview/commands/ChangeCaseCommand.java b/src/jalview/commands/ChangeCaseCommand.java
index 49faa50..00d9000 100644
--- a/src/jalview/commands/ChangeCaseCommand.java
+++ b/src/jalview/commands/ChangeCaseCommand.java
@@ -71,7 +71,7 @@ public class ChangeCaseCommand implements CommandI
       start = regions[r][0];
       for (int s = 0; s < seqs.length; s++)
       {
-        sequence = seqs[s].getSequence();
+        sequence = seqs[s].getSequenceAsString();
         StringBuffer newSeq = new StringBuffer();
 
         if (regions[r][1] > sequence.length())