X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcommands%2FOrderCommand.java;h=02c4fd9b681d5b1a58c79bab55d70a8feaaca4a9;hb=7796bc87c98b21f199f9dc195401223984619091;hp=57097c01bf4a48cff1afad1ef910aa58caca43dc;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/jalview/commands/OrderCommand.java b/src/jalview/commands/OrderCommand.java
index 57097c0..02c4fd9 100644
--- a/src/jalview/commands/OrderCommand.java
+++ b/src/jalview/commands/OrderCommand.java
@@ -1,62 +1,61 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
- */
-package jalview.commands;
-
-import jalview.analysis.*;
-import jalview.datamodel.*;
-
-public class OrderCommand
-    implements CommandI
-{
-  String description;
-  SequenceI[] seqs;
-  SequenceI[] seqs2;
-  AlignmentI al;
-
-  public OrderCommand(String description,
-                      SequenceI[] seqs,
-                      AlignmentI al)
-  {
-    this.description = description;
-    this.seqs = seqs;
-    this.seqs2 = al.getSequencesArray();
-    this.al = al;
-    doCommand();
-  }
-
-  public String getDescription()
-  {
-    return description;
-  }
-
-  public int getSize()
-  {
-    return 1;
-  }
-
-  public void doCommand()
-  {
-    AlignmentSorter.setOrder(al, seqs2);
-  }
-
-  public void undoCommand()
-  {
-    AlignmentSorter.setOrder(al, seqs);
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ */
+package jalview.commands;
+
+import jalview.analysis.*;
+import jalview.datamodel.*;
+
+public class OrderCommand implements CommandI
+{
+  String description;
+
+  SequenceI[] seqs;
+
+  SequenceI[] seqs2;
+
+  AlignmentI al;
+
+  public OrderCommand(String description, SequenceI[] seqs, AlignmentI al)
+  {
+    this.description = description;
+    this.seqs = seqs;
+    this.seqs2 = al.getSequencesArray();
+    this.al = al;
+    doCommand(null);
+  }
+
+  public String getDescription()
+  {
+    return description;
+  }
+
+  public int getSize()
+  {
+    return 1;
+  }
+
+  public void doCommand(AlignmentI[] views)
+  {
+    AlignmentSorter.setOrder(al, seqs2);
+  }
+
+  public void undoCommand(AlignmentI[] views)
+  {
+    AlignmentSorter.setOrder(al, seqs);
+  }
+}