X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcommands%2FRemoveGapColCommand.java;h=28d419ea796b561a5449238ece1463f0477822d7;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=6172ce8e53ed7b76f565d22c4660a3961c641dc4;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git diff --git a/src/jalview/commands/RemoveGapColCommand.java b/src/jalview/commands/RemoveGapColCommand.java index 6172ce8..28d419e 100644 --- a/src/jalview/commands/RemoveGapColCommand.java +++ b/src/jalview/commands/RemoveGapColCommand.java @@ -1,5 +1,5 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. @@ -39,7 +39,8 @@ package jalview.commands; * Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ -import jalview.datamodel.*; +import jalview.datamodel.AlignmentI; +import jalview.datamodel.SequenceI; public class RemoveGapColCommand extends EditCommand { @@ -55,7 +56,7 @@ public class RemoveGapColCommand extends EditCommand int startCol = -1, endCol = -1; columnsDeleted = 0; - edits = new Edit[0]; + clearEdits(); boolean delete = true; for (int i = start; i <= end; i++) @@ -86,7 +87,8 @@ public class RemoveGapColCommand extends EditCommand if (!delete && startCol > -1) { - this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, endCol + this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted, + endCol - startCol, al, false, null); columnsDeleted += (endCol - startCol); @@ -100,7 +102,8 @@ public class RemoveGapColCommand extends EditCommand // This is for empty columns at the // end of the alignment - this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, end + this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted, + end - startCol + 1, al, false, null); columnsDeleted += (end - startCol + 1);