X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcommands%2FRemoveGapColCommand.java;h=28d419ea796b561a5449238ece1463f0477822d7;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=b9b2648ebacf440d1139fbff4afb6d788c6084c8;hpb=2de8acfae59aced665e4c37ad0f7dcc2ed68818e;p=jalview.git

diff --git a/src/jalview/commands/RemoveGapColCommand.java b/src/jalview/commands/RemoveGapColCommand.java
index b9b2648..28d419e 100644
--- a/src/jalview/commands/RemoveGapColCommand.java
+++ b/src/jalview/commands/RemoveGapColCommand.java
@@ -1,20 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.commands;
 
@@ -37,7 +39,8 @@ package jalview.commands;
  * Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
  */
 
-import jalview.datamodel.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
 
 public class RemoveGapColCommand extends EditCommand
 {
@@ -53,7 +56,7 @@ public class RemoveGapColCommand extends EditCommand
     int startCol = -1, endCol = -1;
     columnsDeleted = 0;
 
-    edits = new Edit[0];
+    clearEdits();
 
     boolean delete = true;
     for (int i = start; i <= end; i++)
@@ -84,7 +87,8 @@ public class RemoveGapColCommand extends EditCommand
 
       if (!delete && startCol > -1)
       {
-        this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, endCol
+        this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+                endCol
                 - startCol, al, false, null);
 
         columnsDeleted += (endCol - startCol);
@@ -98,7 +102,8 @@ public class RemoveGapColCommand extends EditCommand
       // This is for empty columns at the
       // end of the alignment
 
-      this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, end
+      this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+              end
               - startCol + 1, al, false, null);
 
       columnsDeleted += (end - startCol + 1);