X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcommands%2FRemoveGapsCommand.java;h=27831dd7a728dcc94492ed234c2a86884ade0ac7;hb=d53c5e2db2e6a2ed15e15561d417a8f5c60a4669;hp=c8dadfa8827903f51e605caa430d64a205a76286;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git diff --git a/src/jalview/commands/RemoveGapsCommand.java b/src/jalview/commands/RemoveGapsCommand.java index c8dadfa..27831dd 100644 --- a/src/jalview/commands/RemoveGapsCommand.java +++ b/src/jalview/commands/RemoveGapsCommand.java @@ -20,25 +20,6 @@ */ package jalview.commands; -/* - * Jalview - A Sequence Alignment Editor and Viewer Copyright (C) 2007 AM - * Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU General Public License as published by the Free Software - * Foundation; either version 2 of the License, or (at your option) any later - * version. - * - * This program is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS - * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more - * details. - * - * You should have received a copy of the GNU General Public License along with - * this program; if not, write to the Free Software Foundation, Inc., 51 - * Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ - import jalview.datamodel.AlignmentI; import jalview.datamodel.SequenceI; @@ -109,9 +90,10 @@ public class RemoveGapsCommand extends EditCommand if (!delete && startCol > -1) { - this.appendEdit(Action.DELETE_GAP, new SequenceI[] { seqs[s] }, - start + startCol - deletedCols, endCol - startCol, al, - false, null); + this.appendEdit( + Action.DELETE_GAP, new SequenceI[] + { seqs[s] }, start + startCol - deletedCols, + endCol - startCol, al, false, null); deletedCols += (endCol - startCol); startCol = -1; @@ -120,9 +102,10 @@ public class RemoveGapsCommand extends EditCommand } if (delete && startCol > -1) { - this.appendEdit(Action.DELETE_GAP, new SequenceI[] { seqs[s] }, - start + startCol - deletedCols, jSize - startCol, al, - false, null); + this.appendEdit( + Action.DELETE_GAP, new SequenceI[] + { seqs[s] }, start + startCol - deletedCols, + jSize - startCol, al, false, null); } }