X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fcommands%2FRemoveGapsCommand.java;h=c5c35f192de109d7a6fda3aeb4e4510e0b70f1ca;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=b78409e844a49044938904455515af6fd4d2269c;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git

diff --git a/src/jalview/commands/RemoveGapsCommand.java b/src/jalview/commands/RemoveGapsCommand.java
index b78409e..c5c35f1 100644
--- a/src/jalview/commands/RemoveGapsCommand.java
+++ b/src/jalview/commands/RemoveGapsCommand.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.commands;
@@ -37,7 +39,8 @@ package jalview.commands;
  * Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
  */
 
-import jalview.datamodel.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
 
 public class RemoveGapsCommand extends EditCommand
 {
@@ -72,7 +75,7 @@ public class RemoveGapsCommand extends EditCommand
 
     int j, jSize;
 
-    edits = new Edit[0];
+    clearEdits();
 
     boolean delete = true;
     char[] sequence;
@@ -106,9 +109,10 @@ public class RemoveGapsCommand extends EditCommand
 
         if (!delete && startCol > -1)
         {
-          this.appendEdit(DELETE_GAP, new SequenceI[]
-          { seqs[s] }, start + startCol - deletedCols, endCol - startCol,
-                  al, false, null);
+          this.appendEdit(
+                  Action.DELETE_GAP, new SequenceI[]
+                  { seqs[s] }, start + startCol - deletedCols,
+                  endCol - startCol, al, false, null);
 
           deletedCols += (endCol - startCol);
           startCol = -1;
@@ -117,9 +121,10 @@ public class RemoveGapsCommand extends EditCommand
       }
       if (delete && startCol > -1)
       {
-        this.appendEdit(DELETE_GAP, new SequenceI[]
-        { seqs[s] }, start + startCol - deletedCols, jSize - startCol, al,
-                false, null);
+        this.appendEdit(
+                Action.DELETE_GAP, new SequenceI[]
+                { seqs[s] }, start + startCol - deletedCols,
+                jSize - startCol, al, false, null);
       }
 
     }